Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2866 |
Symbol | |
ID | 5540355 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3716862 |
End bp | 3717692 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640894990 |
Product | integron integrase |
Protein accession | YP_001432950 |
Protein GI | 156742821 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02249] integron integrase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCTGGACC GCGTACGACA GACGCTGCGC AGAAAGCACT CCTCCTATCG CACGGAGCAG GCCTACGTCC ATTGGATCAA GCGCTTTATC TTCTTCCACA ACAAGCGCCA CCCCGCCGAG ATGGGCGCCC CCGAGATCGA GGCGTTCCTC ACCCGCCTGG CTGTCAAGGA GAACGTGGCC GCCAGCACAC AGAATCAGGC CCTTCAGTCC ATCCTCTTCC TCTATCGTGA AGTGCTCCGC CAACCCGTCG AGGAGCCCAT CCACGCCCTC CGCGCCAAGA AGCCCAAACG CATCCCTACC GTGCTCACCC GCCAGGAGGT CCAGCAGCTC TTCGCCCACC TCTCCGGCGC CCGCCTGCTG ATGGTGCGCC TGCTCTACGG CAGCGGACTC CGCCTTATGG AGTGCCTCCG ACTGCGCGTC AAAGACCTCG ATTTCCCCTA TCAGACCATC ACCGTGCGCG ATGGGAAGGG AGAGAACGAT CGCGTGACGG TCCTGCCGAC TTCCCTCGTC CAGCCCCTCC AGGCCCATCT CGAGCAGGTC CGCCAGCAGC ATGAGGGGGA TCTGGCACAG GGATACGGCG CCGTCTCCCT GCCCGACGCG CTGGCCCGCA CGTATCCCCA CGCGGAGCGG GAGTGGGCAT GGCAGTGGAT GTTCCCCTCT CCTCGCCGCT CCGCCGACCC CCGCTCAGGC GCGATCTGCC GTCACCCCAT GGACCTGGCA ATGCTTCAGC GGGCGGTGCG TCACGCAGCC CGAGCCGCTG GCCTGACAAA GCCGGTCACC CCGCACACGC TGCGCCATTC CCGCTACCCA TCTCCCGGAG GACGGATATG A
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Protein sequence | MLDRVRQTLR RKHSSYRTEQ AYVHWIKRFI FFHNKRHPAE MGAPEIEAFL TRLAVKENVA ASTQNQALQS ILFLYREVLR QPVEEPIHAL RAKKPKRIPT VLTRQEVQQL FAHLSGARLL MVRLLYGSGL RLMECLRLRV KDLDFPYQTI TVRDGKGEND RVTVLPTSLV QPLQAHLEQV RQQHEGDLAQ GYGAVSLPDA LARTYPHAER EWAWQWMFPS PRRSADPRSG AICRHPMDLA MLQRAVRHAA RAAGLTKPVT PHTLRHSRYP SPGGRI
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