| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2424 |
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| Symbol | |
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| ID | 5539905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 3117599 |
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| End bp | 3119785 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640894554 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001432522 |
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| Protein GI | 156742393 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.935396 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCAACG CTCGAAAGCT CAACCGGCGC ACATTCCTGC GCCTGTCCGC TGTGACGGCG
GCAAGCGCAG CGATTGCCGC CTGTGGCGGC GGCGGTCAGC CTGCCACCGC ACCGACGACA
GCGCCCGCCG CGCCTCAACC GACCACAGCG CCAGCGGCGC CCGCTCCAAC CACTCCTCCA
GCCGCAACAG CTGTTCCCCC GGTGACGACC CAATACAAAG AAGCGCCGAT GCTGGCAAAA
CTGGTGCAGG AAGGTAAACT GCCGCCGGTG GACGAGCGCC TGCCGAAGAA CCCCTACACT
CCGCCACACT CCTGGCTCAC AGTTGGCAAG TACGGCGGCG TGCTGAAGAA GACCTACAAC
AACAACTGGG GTATCACCGG CTTCATCCAC GAGATGCAGT ATGGCTCGTC GCCGCTGCGC
TGGCTTAAGG ATGGTCTGGC GATTGGTCCA GGCTTCGTCG AAAGCTGGGA ATCGAATGCC
GACGCGAGCA AGTGGACGTT CAAGATCCGC GAAGGGATCA AGTGGAGTGA CGGTCAACCC
TTCACCACCA AAGACATTAT GTACTGGTGG GAGTACACGG TCGGCGGCAA CGGCAAGGAG
AAGGAGTACC CCGCCGGTCT CAAGCCGATC AACAGCCCGC CTGACGAGGC GCGCTCCGGC
ACCGGCACCC TGATGACACT CAATGCGCCG GATGATTACA CCTTCGAGAT GGTGTTCGAC
GCGCCGGCGC CGCTCACGGC GGACCGTCTG GCAATGTGGG TCAACATGTT CATCGGTCCG
GCCTGGGTTA TGCCACGTCA CTACATGGAG CAGTTCAACC CGGTGCTCAA CCCCGATAAG
TATAAGGACT GGGAAGAGCA TCAGCGCAAG TTCAACCACA ACAACCCCGA CTGCCCGCGC
CTGACCGGTT GGAAACTGGA TATCTTCGAG GAGGGCGTCC GCGCTGTCTG GTCGCGCAAC
CCGTACTACT GGGCGGTCGA TAAGGAAGGC AACCAGTTGC CGTATATCGA CCAGATCATT
GTGACGGCGG TCAAGGACAA GGAGATCGAG AAACTGGCGT ACACCGAGGG GCGCGCCGAT
CATGCGCACT TCCACAGCCA GGGTCTGGCG GATGTGCAGT CGTTGCGCGA CGCCGAAGCC
AAGAGCGGTC TCGAGGTGCG CTTCTGGGAC TCGGGTTCGG GCACCGGTTC GCTCTACTTC
TTCAACATGG ACTTCAAGGA CCCGAAGATG CGCGCCGTGT TCCGCGATCC GAAGTTCCGC
CAGGCGCTGT CACACGCTTA CAATCGCGCC GATGTGCAGA AAGCGGTCTA TTTCGGGTTG
GGCGAACTGA CGACCGGCAC CTTCAGCCCC AAGGCCATCG AGTACAACAT CAACGATCAG
GGCAAGCAGG TGTATGCCGC CTGGCGCGAT AGCTACGTGA AGTACGATCC GGCGCTGGCT
GAACAGATTC TGGACGAAGC CGGCTACAAG AAGGGACCTG ATGGCAAGCG CACGATGCCG
GACGGCAGTC CGCTTCAGAT TCAGATCACC TATGGCGCCG ATCAGGCGCC CGGCGGTGAG
CACCTGTCGA AGAACGAGCG CCTGGCGCGC GACTGGCAGG CGATCGGGAT CGATGCGGTG
CTGACACCTA TTCCGGGTGA GGGCGCCGAC GAGAAGTGGC GCGCCGGCGA GTTGCCGATG
AAGACCACCT GGGAGGTCGG CGACGGTCCC AACCACCTGG TCTTCCCCTC CTGGCTGGTG
GCGGATGAGA CCGAGCGCTG GGCGCCGCTG CACGGTCGCG GGTATACGCT GCGCGGCACT
GCGTCGGAGA AGGAGGAACT GGATAAGAAC CCATGGGACC GCAACCCGCC GCGCATCAAT
CGTGGCGAGC CGGACTATAT GCCGGCGATT GGCAAGCTTC ACGAACTGTT CGACAAGAGC
AAGGTGGAGC CAGATGCGAT GAAGCGCCAC CAACTCGTGT GGGATATGAT CAAAGTCCAC
ATCGAGGAGG GTCCGTTCTT TACCGGGACG ATCGCAAACC CGCCGCGCAT CATTTTGGTG
AAGAAGGGGT TGATGAACGT GCCGACCCGC GATGACCTTT TGAAGGAAGG GTTGGGCGGT
TTCGTCAATC CGTGGATCAT CCCCTCTCCG GCGACCTATG ACCCGGAGAC CTGGTACTGG
GATAATCCTG AGGCGCATAC GGCGTAG
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| Protein sequence | MSNARKLNRR TFLRLSAVTA ASAAIAACGG GGQPATAPTT APAAPQPTTA PAAPAPTTPP
AATAVPPVTT QYKEAPMLAK LVQEGKLPPV DERLPKNPYT PPHSWLTVGK YGGVLKKTYN
NNWGITGFIH EMQYGSSPLR WLKDGLAIGP GFVESWESNA DASKWTFKIR EGIKWSDGQP
FTTKDIMYWW EYTVGGNGKE KEYPAGLKPI NSPPDEARSG TGTLMTLNAP DDYTFEMVFD
APAPLTADRL AMWVNMFIGP AWVMPRHYME QFNPVLNPDK YKDWEEHQRK FNHNNPDCPR
LTGWKLDIFE EGVRAVWSRN PYYWAVDKEG NQLPYIDQII VTAVKDKEIE KLAYTEGRAD
HAHFHSQGLA DVQSLRDAEA KSGLEVRFWD SGSGTGSLYF FNMDFKDPKM RAVFRDPKFR
QALSHAYNRA DVQKAVYFGL GELTTGTFSP KAIEYNINDQ GKQVYAAWRD SYVKYDPALA
EQILDEAGYK KGPDGKRTMP DGSPLQIQIT YGADQAPGGE HLSKNERLAR DWQAIGIDAV
LTPIPGEGAD EKWRAGELPM KTTWEVGDGP NHLVFPSWLV ADETERWAPL HGRGYTLRGT
ASEKEELDKN PWDRNPPRIN RGEPDYMPAI GKLHELFDKS KVEPDAMKRH QLVWDMIKVH
IEEGPFFTGT IANPPRIILV KKGLMNVPTR DDLLKEGLGG FVNPWIIPSP ATYDPETWYW
DNPEAHTA
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