Gene Rcas_2274 details

Gene Information

• Locus tag: Rcas_2274
• ID: 5539755
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Roseiflexus castenholzii DSM 13941
• Kingdom: Bacteria
• Replicon accession: NC_009767
• Strand: +
• Start bp: 2927860
• End bp: 2931207
• Gene Length: 3348 bp
• Protein Length: 1115 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 640894407
• Product: protease domain-containing protein
• Protein accession: YP_001432375
• Protein GI: 156742246
• TIGRFAM ID: [TIGR01451] conserved repeat domain

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0667485
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 0
• Fosmid unclonability p-value: 0.00000000204116
• Fosmid Hitchhiker: No
• Fosmid clonability: unclonable

Sequence

Gene sequence

ATGAAACGCT ACACGACACG CCTGAGTCTG GCAGCGATGA CTTTGTTGCT GTCGCTCATT 
CTGGCAGCGC TGTCGCCGCT GCGCGCCGTT GAGGCGCAAA CCCGTCCAAA TCGCCCAACA 
CCCGGAACGC CGCTGACAAT CGAACCGGCG ACCGTGACGA ACCGCGAAGA CCTGGCAGTC 
AACAAGAACA TGGCTGTCTC TCGTGATGGC TCGATGGCGA GTGTCTTTCT CAAGATCGAC 
TCGCCCTCGC TGGCTACGTT TATGGCGCAA AATGGCATAA CGGATATGAA TGCGCTGGCT 
GCACAAAACT ATCTGCGCCA GTTGAACGCC GAACTCGATG CGCTCGTCGC GCGGGCGAAG 
CAATTGGTTC CCGGTCTGAG TGTCACCCAT CGTTTTGACC TGATCATCGG CGGCGTTGCG 
GTGGTGGCGC CGGTCGGTGA GATCGATAAA CTGCGGCGCC TGCCGAACGT GGTGGACGTG 
ATCAACGACC GGATCGAGAA AATCGAAACC TACCGCACTC CCGCTTTCAT TGGCGCAACC 
ACTGCATGGG GCAGAGGCGG CGGCTCGGCT TTTGCCGGCG AAGGGGTCAT TTTCGGTGTG 
CTCGATAGCG GCGTCTGGCC CGAACACCCT TCGTTCTCCG ATCCCGATCC GCTCGGCAAG 
CCATACGCGC CGCCGCCACC TGCTCCGGGC AACCCCGGCG GTGTGCGCGC GTGCGATTTC 
GGCAGTGCGA CCCCCGGCGA CGCGCCGTTT GCCTGCAACA ACAAACTGAT CGGCTCCTAC 
CGCTTTATGA CCGCCTATGA CTTCTTCGTC GGCACCGAGC CATACGAATT CCGATCCGGT 
CGTGATGATG ACGGCCACGG CACCCACACG GCCTCGACCG CAGCCGGCAA TCGCGGCGTG 
GCAGCCAGTG ATGGCAGCCG GGTGTTCGGC GTGATCTCCG GCATCGCCCC GCGCGCTTAT 
GTCGTCAACT ACAAAGTCTG CGGTGAATTG GGCTGCTTCT CGACCGACTC GGCGGCAGCG 
GTGCAGCAGG CGATCCGCGA TGGCGTGCAT GTGATTAACT TCTCGATCAG CGGCGGTACC 
AACCCCTACA GCGATATTGC TTCGCTCGCC TTCCTCGACG CCTACAACGC CGGTGTTTTG 
GTCTCTGCCT CGGCTGGCAA CTCGGGTCCC GCAGCCGACA CGGTCAACCA TCGTGAGCCG 
TGGGTGGCCA CGGTTGGCGC CAGCACGTCG GACCGGTCGT ACCTGAGTAC GCTCACCGTG 
CAGGGCAGCA GCGGTACGTT CACCGCCGTC GGCGCATCGA GCGGCGCTGG TATTGCCACA 
CCAACACAAA TTGTGGTCAA CAACGCCGAT CCGCTCTGTC TGAACCCGGC GGCGCCGGGT 
AGCTTTACCG GGCAGATCGT TGTCTGTCAG CGTGGCGTGA TTGCGCGCGT CGCCAAGAGC 
GCCAATGTCG CCGCCGGCGG CGCCGTCGGC ATGATCCTGT ACAATCCGTC GCCGAGCAGC 
CTCGATGCCG ATTTCCATGT CATTCCCACG GTTCACATCC AGAATACCGA CGGTACGGCG 
CTGCTGGCAT TCCTGACCGC CAACCCCGGC GCGACGGCGA CCTTCACTGC CGGCGCCCCC 
GGCTCGATTC AGGGTGATGT GATGGCCGGC TTCAGCTCGC GCGGCGGACC GGGCCAGACG 
CTTGGTATCA GTAAGCCCGA CGTTACTGCG CCCGGCGTCA ATATTCTGGC CGGCTACACT 
GCGATTGAAT ATGGCACGCC GGTGCCGCAA TTCGCCTTCC TCAGCGGCAC CTCGATGTCC 
AGCCCGCATA ACGCCGGCGC CGCCATTTTG CTGAAGTGGC TGCACCCGAC GTGGACCCCA 
GGGCAGATCA AGTCGGCGTT GATGACGACA GCCAAAGCGG CCGGAGTGTT CAAGGAGGAT 
GGTGTGACGC CGTTCACCCC GTTTGATGCT GGCTCTGGGC GCATTAATCT GCGCAAGGCG 
TGGGATCCGG GGTTGACGTT CGATGAAACC GGTGCAAATT ACGTGACGTT GCAGAACGAA 
CTGTGGAAGG CAAACTATCC CAGCCTGTAC GTCCCGAAGA TGCCGGGGTT GATCACGGTC 
AGCCGCACGG CGCGTGAGGT GTCGGGCTAC GATAGTTTCT ACAAGAGCAC TGTCTCGTAT 
CAGGCCGGTC AGCCACGTGA TTTTACGGTA ACGGCGCCAA AAGAGTTCTT CGTTCCGGCC 
AATGGCACGT ACACCTTCGA CATTACGGTC GATGCGCGCA ATGTTCCGGT AGGTCAGGTG 
CGCCACGCGG TCGTTATCTT CACCGAACGC AACGGTTGTC AGGTCCGCTT CCCGATCACC 
ATCGTGCGCG GCGAGCCGGA CATTCGCATG GAGAAGCGGT GCAATCCGGC GACGCTGGCG 
CTGCGCGGCA CAACTGACTG CACGATCACG ATCTCGAACA CGACCTTCAG CAATGCAAGC 
GTGACGCTCA ATGACACGAT GCCCAGGCAG TTGAAACTGG TAAGCGGCAG CGTGACCGGT 
GGGGCAACTG AGATGGGCAA CGGTCTCACC TATAGCGGGA CCTTGACCGG CGCAGCGCCG 
CCGGATGTGA GCGCCGGCCG GCTGACCTTT AACGGGTATC TCTCGCTGGC GAGCCTCGGC 
GCTTCTCCCA ATGTCTCCCT TGGCGACGAG TCGCTCGTCA ATCTTACCCT CTCGCGTCCG 
TTCCTGTTTG GCGGGCAAAG CTACAACACC GTCGCTATGG TCAGCAACGG TTATGCCGTG 
GTTGGCGGCG GCACTGCGGC GGATATTTCA TTCGTCAACC GCACTTTCCC CAACTCGGCG 
CGCCCGAACA ACACGCTCGG CGCGTTCTGG ACTGACCTCG ACGGCAGCGC TGGCGGCAAC 
TACTACGCTT ACCTTGTCGG CTTCGGTCCG TGTAGCAATC CGGCCAATGC CTGCTGGCTG 
ATTCTGGAAT GGGAGAATGC GCCAAACTGG AGTGATAGTC AAGTCAATAC GTTCCAGATC 
TGGATCGGAC TGAACGGCGT CGAGGACATC ACCTACTCGT ATGGTCCGGT TCTTTCAAGC 
GGTGATGGCG GGTTCGTCAC GGTCGGCGCT GAGAATGCGT TTGGCAATCG CGGCGCGAAT 
ATCTACAGTA ACGACGGCTT CGGACCGGTT ATCGGCACGA TTCCGACGGC AGGGTCGAAC 
GATGTCTACA TCGCAACGAC CCCTGGCGCT CCCGGTCAGA CGGTGACCAT CGGGTTCCGG 
GCGCAGGGCG TGCGTGTCGG TCGCTGGACG AACTACGCCG AGTTGACCAG TCCGGCGTTC 
TTCGGCACGT ACATTAAGTC GTTCAGCGGC GAAGTTGTGC GACCGTAA 

 

Protein sequence

MKRYTTRLSL AAMTLLLSLI LAALSPLRAV EAQTRPNRPT PGTPLTIEPA TVTNREDLAV 
NKNMAVSRDG SMASVFLKID SPSLATFMAQ NGITDMNALA AQNYLRQLNA ELDALVARAK 
QLVPGLSVTH RFDLIIGGVA VVAPVGEIDK LRRLPNVVDV INDRIEKIET YRTPAFIGAT 
TAWGRGGGSA FAGEGVIFGV LDSGVWPEHP SFSDPDPLGK PYAPPPPAPG NPGGVRACDF 
GSATPGDAPF ACNNKLIGSY RFMTAYDFFV GTEPYEFRSG RDDDGHGTHT ASTAAGNRGV 
AASDGSRVFG VISGIAPRAY VVNYKVCGEL GCFSTDSAAA VQQAIRDGVH VINFSISGGT 
NPYSDIASLA FLDAYNAGVL VSASAGNSGP AADTVNHREP WVATVGASTS DRSYLSTLTV 
QGSSGTFTAV GASSGAGIAT PTQIVVNNAD PLCLNPAAPG SFTGQIVVCQ RGVIARVAKS 
ANVAAGGAVG MILYNPSPSS LDADFHVIPT VHIQNTDGTA LLAFLTANPG ATATFTAGAP 
GSIQGDVMAG FSSRGGPGQT LGISKPDVTA PGVNILAGYT AIEYGTPVPQ FAFLSGTSMS 
SPHNAGAAIL LKWLHPTWTP GQIKSALMTT AKAAGVFKED GVTPFTPFDA GSGRINLRKA 
WDPGLTFDET GANYVTLQNE LWKANYPSLY VPKMPGLITV SRTAREVSGY DSFYKSTVSY 
QAGQPRDFTV TAPKEFFVPA NGTYTFDITV DARNVPVGQV RHAVVIFTER NGCQVRFPIT 
IVRGEPDIRM EKRCNPATLA LRGTTDCTIT ISNTTFSNAS VTLNDTMPRQ LKLVSGSVTG 
GATEMGNGLT YSGTLTGAAP PDVSAGRLTF NGYLSLASLG ASPNVSLGDE SLVNLTLSRP 
FLFGGQSYNT VAMVSNGYAV VGGGTAADIS FVNRTFPNSA RPNNTLGAFW TDLDGSAGGN 
YYAYLVGFGP CSNPANACWL ILEWENAPNW SDSQVNTFQI WIGLNGVEDI TYSYGPVLSS 
GDGGFVTVGA ENAFGNRGAN IYSNDGFGPV IGTIPTAGSN DVYIATTPGA PGQTVTIGFR 
AQGVRVGRWT NYAELTSPAF FGTYIKSFSG EVVRP