| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2228 |
|---|
| Symbol | |
|---|
| ID | 5539709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2876810 |
|---|
| End bp | 2878390 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640894361 |
|---|
| Product | site-specific DNA-methyltransferase (adenine-specific) |
|---|
| Protein accession | YP_001432329 |
|---|
| Protein GI | 156742200 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0827] Adenine-specific DNA methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0314397 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000846728 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCTACGA CGAACTACAA CCCTGATGTG CTCTCCTGCC TGGCGAACCT CTCCAGCGAC
GAGGTGTTCA CGCCGCCGCA ACTGGCTAAC CAGATGCTGG ACCTGCTGCC GGCTGAGCTG
TGGAGCAATC CCGAGGCGCG CTTTCTCGAC CCCTGCTGCA AATCGGGCGT GTTCCTGCGC
GAGATCGCCA AGCGGCTGGA CAAGGGATTG GAAGCCAAAA TCCCTGACCG GCAGGCACGG
ATTAACCATA TTATGAAAAA CCAGCTCTTC GGCATCGCCA TCACCGAGCT AACTGCGCTC
ATCTCGCGTC GTTCGCTCTA CTGCTCCAAG ACTGCCAACG GCAAGTATTC GGTCTGCACC
GCCTTTGACA CACCCGAAGG CAACATCCGC TACCGGCGCA TTGAGCACAC CTGGAAAGAC
GGCCGCTGCG TGTTCTGCGG CGCCAACGAA GCCAACTACG CCCGCGGCGC GGAACTGGAA
ACCCACGCCT ACGAGTTCAT CCACACCGAC AACCCCCTTT GCCTTTTCGA CGAGCGAAGT
GAGGGTTGTC ATTTCGACGA GCGAAGTGAG GAGAAATCCA TGAAATTCGA TGTGATCATC
GGCAATCCGC CGTATCAGTT GAGCGACGGC GGCTTTGGCC GAAGCGCCAC TCCGATTTAC
AACAAGTTTG TCCATCAGGC GAAGAAGCTC AATCCACGCT ATCTCGTGAT GATTATTCCA
GCACGTTGGT ATTCCGGCGG AAAGGGCTTG GACGACTTCC GCGAGGGGAT GCTAAAAGAC
AACCGCATTC TCGAGATACA CGACTTCCCC GATGCGACAG ATGTTTTCCC CGGTGTACAA
ATCAAAGGTG GTGTCTGCTA TTTTCTTTGG GACCGCGATC ATCCCGGCTT GTGCAAGGTC
TCCAACTATT TGCACGGCAA GGTGGCAACG ATGGAGCGCC CGTTGATGGA AGCGGGGGCA
GATACCTTTA TCCGCTACAA CGAGGCGATT TCTATTCTCC GTAAAGTTCA GCAATTCAAC
GAACCCTCGT TCAAGACGCT GGTAAGCGCA CAAAAGCCGT TTGGGCTTAG AACGTATGTT
CTTGGCAAAC CAGAACCATT TCCGGGAGCA GTGAAGCTTT ATCAGAACGG CGGCGTTGGT
TGGGTCAGCC GAAAGGAAAT CGCACAAAAT CGGGAATGGA TTGATACTTA TAAGGTTTTT
ATTCCCAGAT TAGGTAGTGG AAGTGACAGT TTCCCACATC CGATACTAGG ACATCCATTT
GTAGGCGAAC GCAATTCTGC CTGCACCGAG ACGTATCTTG TCATCGGCCC TTGCAACACA
GAGACCAAAG CAGAAAATAT CATTTCGTAT ATCCGAACTC GCTTCTTTCG ATTTCTTGCG
CTATTAAACA AGCCGACGCA AGATGCGCCC AAGCGAGTCT ATCAATTCGT CCCCATGCAA
GACTTCTCCA AGCCTTGGAC TGATGAAGAA CTCTACCAAA AATACGGCCT AACCCAAGAC
GAGATCGCCT TCATCGAATC CATGGTCCGG CCGATGCCAG CGGAGGACGA ACCGGAACCG
ACGGAGGAAA CCGATGAGTA A
|
|---|
| Protein sequence | MPTTNYNPDV LSCLANLSSD EVFTPPQLAN QMLDLLPAEL WSNPEARFLD PCCKSGVFLR
EIAKRLDKGL EAKIPDRQAR INHIMKNQLF GIAITELTAL ISRRSLYCSK TANGKYSVCT
AFDTPEGNIR YRRIEHTWKD GRCVFCGANE ANYARGAELE THAYEFIHTD NPLCLFDERS
EGCHFDERSE EKSMKFDVII GNPPYQLSDG GFGRSATPIY NKFVHQAKKL NPRYLVMIIP
ARWYSGGKGL DDFREGMLKD NRILEIHDFP DATDVFPGVQ IKGGVCYFLW DRDHPGLCKV
SNYLHGKVAT MERPLMEAGA DTFIRYNEAI SILRKVQQFN EPSFKTLVSA QKPFGLRTYV
LGKPEPFPGA VKLYQNGGVG WVSRKEIAQN REWIDTYKVF IPRLGSGSDS FPHPILGHPF
VGERNSACTE TYLVIGPCNT ETKAENIISY IRTRFFRFLA LLNKPTQDAP KRVYQFVPMQ
DFSKPWTDEE LYQKYGLTQD EIAFIESMVR PMPAEDEPEP TEETDE
|
|---|
| |