| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2159 |
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| Symbol | |
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| ID | 5539639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2774087 |
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| End bp | 2775445 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640894292 |
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| Product | tryptophan synthase subunit beta |
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| Protein accession | YP_001432261 |
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| Protein GI | 156742132 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1350] Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) |
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| TIGRFAM ID | [TIGR01415] pyridoxal-phosphate dependent TrpB-like enzyme |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000410823 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGACCG TCAAGTATCT GCTCGCTGAG GATCAGATGC CGACCGCCTG GTATAATATT
CAGGCAGATC TGCCCACACC GCCGCCACCG GTGCTCCATC CCGGCACAGG ACAGCCGATT
GGTCCGCAGG ACCTGGCGCC GCTCTTTCCG ATGGCGCTGA TCATGCAGGA GGTGAGCACC
GAGCGCTTCA TCGAAATTCC CGAAGAGGTG CAGACAATCT ATCGCCAGTG GCGCCCGACG
CCGCTGTTCC GCGCGCGACG CCTCGAACAA GCGCTCGACA CGCCAGCCCG CATTTACTAC
AAGTATGAGG GCGTCAGTCC CGCAGGAAGC CATAAGCCGA ATACCGCCGT CGCGCAGGCG
TACTACAACC AACAGGAAGG GGTCAAACGC CTGGTGACCG AAACCGGCGC GGGGCAATGG
GGTTCGTCGC TGGCAATGGC GGGCGCGTTC TTCGGGATTG AGGTGCTGGT CTTTATGGTC
AAGGTCAGTT ACCAGCAGAA GCCGTACCGC CGCGCGCTGA TGGAAGCCTA CGGCGCGCGC
GTGGTCGCCA GCCCCAGCGA AGAGACCAAC GCCGGGCGAG CGATCCTTGC CGAACATCCC
GATAGCACCG GCAGCCTGGG AATCGCTATC TCCGAAGCGG TCGAGGTGGC AGCACAGGAC
CCGGAGGCGA AGTATTCGCT CGGCAGCGTG CTCAACCACG TGCTGCTGCA CCAGACTGTT
ATCGGCGAAG AGGCGCTGGC GCAGATGGAG ATGGCGGGTG ATTATCCCGA TATTATCGTT
GGCTGCACTG GCGGCGGCAG CAACTTCAGC GGCATCTCGT TCCCGTTCAT CGGAAAGAAA
CTGCGCGGCG AGCGCAATGT GCGTGTGGTG GCGGTCGAAC CGGCAGCCTG CCCGAGTATG
ACGCGCGGTA AGTATGCCTA CGACTTTGGC GACACCGCCA AACTGACGCC GCTCGTCAAG
ATGCACACTC TGGGACATGA TTTTGTGCCG CCGGGGATTC ATGCCGGTGG GCTGCGCTAC
CACGGTATGG CGCCGCTGGT CAGTCATCTG CTCGAATTGG GAGTGATCGA GGCGATCAAC
GTTCAACAAC TTGAGACGTT CGCGGCAGGC ATTCAGTTCG CTCGTGCAGA GGGGATCATC
CCGGCGCCGG AAGCCAACCA CGCCGTTGCG GGTGCGATCC GTGAGGCGCT GCGCTGCAAG
GAGGAAGGGG TCAGCCGCGC GATCTTGTTT AACCTCTGCG GACACGGGCA CTTCGATATG
CAGGCGTATA CCGACTACAT GGCAGGTAAA CTGCGCGACT ACGAGTACTC TGAGAAAGAG
GTCGCCATGG CGCTCGCCGG GTTGCCGTCG GTGGAGTAG
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| Protein sequence | MKTVKYLLAE DQMPTAWYNI QADLPTPPPP VLHPGTGQPI GPQDLAPLFP MALIMQEVST
ERFIEIPEEV QTIYRQWRPT PLFRARRLEQ ALDTPARIYY KYEGVSPAGS HKPNTAVAQA
YYNQQEGVKR LVTETGAGQW GSSLAMAGAF FGIEVLVFMV KVSYQQKPYR RALMEAYGAR
VVASPSEETN AGRAILAEHP DSTGSLGIAI SEAVEVAAQD PEAKYSLGSV LNHVLLHQTV
IGEEALAQME MAGDYPDIIV GCTGGGSNFS GISFPFIGKK LRGERNVRVV AVEPAACPSM
TRGKYAYDFG DTAKLTPLVK MHTLGHDFVP PGIHAGGLRY HGMAPLVSHL LELGVIEAIN
VQQLETFAAG IQFARAEGII PAPEANHAVA GAIREALRCK EEGVSRAILF NLCGHGHFDM
QAYTDYMAGK LRDYEYSEKE VAMALAGLPS VE
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