| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1995 |
|---|
| Symbol | |
|---|
| ID | 5539473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2561676 |
|---|
| End bp | 2562182 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640894130 |
|---|
| Product | HNH endonuclease |
|---|
| Protein accession | YP_001432101 |
|---|
| Protein GI | 156741972 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1403] Restriction endonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0301593 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGGGCAAC GAGTTCTCGT TCTCAACGCA AGCTACGAGC CGCTGCAATT CATCTCCGTG
CGTCGCGCGA TTGTGCTCCT GCTGCAAGAT AAGGCTGAAC TCGTCGAAGC AGCCGAGCAG
CGCCTGCGCG CACGCGGCAT TTCCCTCGAA GTACCGCTCG TCATCCGGCT GGTGCGGTAT
ATTCGCATCC CGCGCCGCAT GCGTCTCCCC TGTTCGCGCC GCAGCATCCT GATGCGCGAC
CGCGAGACGT GCCAGTACTG CGGCGCGCAG CCTGGTCGCG CCCATCTCAC CGTTGATCAC
GTCGTACCGC GGTCACGTGG CGGTGAGACG ACGTGGGAGA ATGTGGTGAC AGCCTGCCGC
GACTGCAACC ACCGCAAAGG CGGGCGAACC CCGGAAGAAG CCGGCATGAC GCTGCTGACC
ATCCCCCGTC AGCCACAGTA CGTGGCGTTC GCGCTGCTGG GCGAACTCGA ACGCCACGAC
GTATGGCGCA AATATGCATA CGTGTAA
|
|---|
| Protein sequence | MGQRVLVLNA SYEPLQFISV RRAIVLLLQD KAELVEAAEQ RLRARGISLE VPLVIRLVRY
IRIPRRMRLP CSRRSILMRD RETCQYCGAQ PGRAHLTVDH VVPRSRGGET TWENVVTACR
DCNHRKGGRT PEEAGMTLLT IPRQPQYVAF ALLGELERHD VWRKYAYV
|
|---|
| |