| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1943 |
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| Symbol | |
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| ID | 5539421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2489617 |
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| End bp | 2491797 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640894079 |
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| Product | membrane protein-like protein |
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| Protein accession | YP_001432050 |
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| Protein GI | 156741921 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5305] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00098617 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCCAGT TTGTAACCGC CAGTCTGACC GCCTTCACCC GATGCGCTCG AGGACTCGCC
GGCAGCCAGG CAGACGCCGC ACATCGGATG ACCTTGCTCA TCGTCGCATT GACCGCGTTG
GCGTTCGGGT TGCGCCTGTA TCGCCTGGAT GCGCAGAGCC TGTGGCTCGA CGAGGGAAGT
ACATGGGTCG AGGTGACCGG CAAGGGATGG CTGACACTCT TCGGTGAATT GTTTAGCCCC
ACTGCTGGTT ACCCGCTCTA TCATCTGCTG TTGAAGGCAT GGGTCCTCGT GGCAGGCGAC
TCGGAGTGGG CTTTGCGCTT CCCGTCGGCA CTGGTAGGGG CGCTGGTCAT CCCGGCGCTG
ATGGCGGCAG TTGACGAACT GCGCGTCGTT TCAGGGCGGA TGAGTAAAGG GCGCGCATCA
GCAGCGGTCG GCTTGCTCGC AGCGTTCTCG CCGTATGCTC TCTGGCACGC ACAGGACGCA
AAAGTCTACA GTCTGCTCAT CCTGGCGTCG GCGCTGCTCA TGTGGACACT GCTGCGCGCC
GTGCGAACGG GTGCACGGCG TGCCTGGCTA CTCTTCGCTA GCGTGTCCCT GATCAGTATC
TTTGTGCATC GTCTGGCGCT CTTATCGCTG GCGGGCGCCG TGCTCGTCGT TGCCTTGCAC
CTGTGGCGGC GCGATTCCAG GATCGCGCAC CAGTGGGCGA TGCTGTGGGC GGCAGGGGCG
CTGGCGCTGA GCATCGTCGG GGTTGCCGGA GTGATCCTGG CGACGCGCAA CGAACGCTTA
GGCAATGAGC GCAATGCCGT CGGCATGCTC GAAGGACTCT GGTTCACCTT TGCGCATTTC
AGCCTGAACC GCTGGCCCGG CGAACTGGAG GGCTACCTGA GATTACCTGC TGTGATCTGG
TTGCTGCCGT TTGGCGCTTT GACGGTGTGG GGCGCAGTGG CGCTGATACA GGATAGACGC
GCAGGTCGCG GCGGCGCCGG CACTGTTCTG GCGCTCTTCC TGACGCCACT GGCACTGTTC
GCAATTGTTC ATACCCTGGC GCCGGTGTAC GAAGCGCGGT ATGCTGCATC GGCGTTTCCG
GCATGGCTCC TTCTCCTGGC ATATCCACTG ATAACGCATG GGAATGAACA TAACGCTGCG
CGCCCGTCCA GGCGGTCGGC TGCGCATCCC GTCGTCACAC TCCTGATCGT CGTTGCTCTG
TTGGCGTGCG TTGCAACGCT CATGCAGCCA GGAAAGGGTC TCTTCAGCGG CGATCCGGTC
AAGGAACAGT GGCGCGAAGC GGTCGCGGCC CTCGCTGCGC GCGTCCATCC CGATGATCTG
GTGCTCGTGC ATCCGCACTA TGTGATGCCG ATGTACACGT ACTACGCTCC CCGCGTCACT
CCCGATCCGC TGCCGCAGCC GGTCACATTC CCTGTGTTTG CCGAAGGTGA CACATGCGGT
ATCGTCAACC CGACGCGGCA ACAGATGCTC GAATGTATCC GGCGTCGCTT CGAGCCATTC
TATAATCAGC AGGCGACCGG CAAAAAGCGT GCTCTGTTGC TGATCGCACC CGATCACGCA
CGGACGGTCG ATCCGCCGCC GCTGCCGGTC GATCGCTTTG GGTGGGTCGG GTTACGCTTT
CAGTATCCGC AACGCACCTG GCCCTGCGGT GGCATTGAGT TCGTCGGCGT GCTTCTCATG
TGCCAGAGTT TCCCCGAAAC CTTCAATCCT GGCAGTCCGG GAATGATCCC GCAACCGGCT
CAACCGCTCG AAGCGGTTTT CGGCAGCGAG TTGCGCCTGC GCGGCGTGAC ATTGGCGCTT
CATGGCGGCG CTGCGCGAGC AGGCGGCGCA CTCCCTGTCA CCCTCTATTG GGAAGCGGTC
GCGCCGCCGT CCCGCGACTA TCGTATGTTT CTGCACCTCT GCCGCGACTG TGATATTCCG
CCCCGTGCCA ACGATGACGG ACCGCCGCTC GGCGGGTATG CGCCCGCCGG GATGACCACC
ACCTGGCGTG TCGGCGATCC GGTGCACGAT GAGCGGACGC TGACGCTGCC CCATGACCTG
CCGCCTGGTC GGTACACCTT GCTCCTGGGG GTCTACAGCG GTGATGGCGC GCCTGCCACG
CGCCTGCCGA TCACAATGTC TGCGCCAACG CTTCCTGAGA ATCGCCTTGT GCTGGGAACT
GTTGACATCG CAGCGCCGTA A
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| Protein sequence | MRQFVTASLT AFTRCARGLA GSQADAAHRM TLLIVALTAL AFGLRLYRLD AQSLWLDEGS
TWVEVTGKGW LTLFGELFSP TAGYPLYHLL LKAWVLVAGD SEWALRFPSA LVGALVIPAL
MAAVDELRVV SGRMSKGRAS AAVGLLAAFS PYALWHAQDA KVYSLLILAS ALLMWTLLRA
VRTGARRAWL LFASVSLISI FVHRLALLSL AGAVLVVALH LWRRDSRIAH QWAMLWAAGA
LALSIVGVAG VILATRNERL GNERNAVGML EGLWFTFAHF SLNRWPGELE GYLRLPAVIW
LLPFGALTVW GAVALIQDRR AGRGGAGTVL ALFLTPLALF AIVHTLAPVY EARYAASAFP
AWLLLLAYPL ITHGNEHNAA RPSRRSAAHP VVTLLIVVAL LACVATLMQP GKGLFSGDPV
KEQWREAVAA LAARVHPDDL VLVHPHYVMP MYTYYAPRVT PDPLPQPVTF PVFAEGDTCG
IVNPTRQQML ECIRRRFEPF YNQQATGKKR ALLLIAPDHA RTVDPPPLPV DRFGWVGLRF
QYPQRTWPCG GIEFVGVLLM CQSFPETFNP GSPGMIPQPA QPLEAVFGSE LRLRGVTLAL
HGGAARAGGA LPVTLYWEAV APPSRDYRMF LHLCRDCDIP PRANDDGPPL GGYAPAGMTT
TWRVGDPVHD ERTLTLPHDL PPGRYTLLLG VYSGDGAPAT RLPITMSAPT LPENRLVLGT
VDIAAP
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