Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1587 |
Symbol | |
ID | 5539063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2039956 |
End bp | 2040855 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640893725 |
Product | intradiol ring-cleavage dioxygenase |
Protein accession | YP_001431698 |
Protein GI | 156741569 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCCG ATGATCGCCC GATAGGACGC ATTCTTACCC GGCGCGAAGT GCTGGCGCTG CTCGGCATAT CTGCCGCTAC GCTGCTGACC GGCTGCGGCG CAGCCGCAGA AACGCCGGCC AGCAATGCGC CTGCCGCCTC GCCGGTACAG CCCGACACGC CTGCCACGTT CGCTGCGCAG CCGGAACTAT CACCGGTTGC GACACCGGCG CCAACCGCCA CCCCGATTGA ATCATCAGTG ATTGCAACAA CTGTGCCGAC AGCCAGCCCC GCGGCTATCG GCAGCAGGCC GGTTCCGGCG TGCGTGGTGC GCCCTGAACA GACGGAGGGA CCATATTTTG TCGATACCCA ACTGAACCGT TCCGATATTC GTTCCGATCC CGCGAGCGGC GTGGTCAAAG AGGGATTGCC GTTGCTGCTC ACCTTCGTTG TCAGCCAGGT TGGCAGCGCC GGCTGCGCGC CACTTAGTGG CGCACTGGTG GACATCTGGC ACTGCGATGC CCAGGGGGTC TATTCCGGTG TGCGCGATCC TCGCATCGAC ACGCGCGGGC AGCAGTGGCT GCGCGGTTAT CAGATGACCG GCGCCGATGG CGTGGCGACC TTCACGACTA TTTATCCCGG TTGGTATCCG GGACGCACCG TTCATATCCA TTTCAAGATT CGCGCAACGA ATGCCGCCGG GCAGGTCTAC GACTTTACCT CGCAACTCTA CTTTGACGAC GCCATCAGCG ATGCCGTATT TGCGCAAGCA CCCTACGCAG ACCGGGGACG TCGCGCGACC CTTAATCAGA ACGATAGCAT TTTCCGGCAG AGCGGCAGTC AGTTGATGCT GAACCTGACC CCGCTCGACC AGGGGTATGC GGCGACTTTC GAGATTGGGG TGGATTTGGG TGAGGGGTGA
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Protein sequence | MDADDRPIGR ILTRREVLAL LGISAATLLT GCGAAAETPA SNAPAASPVQ PDTPATFAAQ PELSPVATPA PTATPIESSV IATTVPTASP AAIGSRPVPA CVVRPEQTEG PYFVDTQLNR SDIRSDPASG VVKEGLPLLL TFVVSQVGSA GCAPLSGALV DIWHCDAQGV YSGVRDPRID TRGQQWLRGY QMTGADGVAT FTTIYPGWYP GRTVHIHFKI RATNAAGQVY DFTSQLYFDD AISDAVFAQA PYADRGRRAT LNQNDSIFRQ SGSQLMLNLT PLDQGYAATF EIGVDLGEG
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