Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1395 |
Symbol | |
ID | 5538868 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1784017 |
End bp | 1785867 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640893532 |
Product | type IV secretory pathway VirB4 components-like protein |
Protein accession | YP_001431508 |
Protein GI | 156741379 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0290868 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCACTCC GAGATGCGCT TGCCCGACCG ATCATCGAGC CGGTACGCCG CCGCACCGCC AACGCAGCGT TTCTTTCCGG CACCACAACG CTGACCACGC TGCTCGCGCC CGACGGCATT GATCGGCGCT GGAGCCATAT GATCCAGGTG GGCGATTCCT TTATCACCAC ACTGGAAGTG CGCGCATTCC CGCCGGTGCT CACACTGGCG TGGCTCGACG ATCCCACATT GGGGCTGGAC AGTTCCGGCA TTACGGTTCA TCAGCGCCTC GTGCCGGTTC CCGATGCGCT TGCGCGCCGC TGGCTGGCGC GCAGCGAAGA CGCGGCGCTT GGCACACTGG CCGGCGACGC ACAGGCAGGC ACGCATTTCG ACGCTGAAGC GCAGCAGGGT ATCGAAGCAG CAGCGGCGCT GCGCCACGAT CTCACGGCAG GAACAGACCG CCTGTTCCAG GTAGCGATCA CCATCACCAT AGCAGCGGCA ACCCCCGATG AACTTGCAGC CCGTATTGAT CGGGTGCGGC TCGCTGCGGC ACAGCAGGGA ATCCTGCTCG GCAGCATGCA GTTTCAACAG TGGGAAGGGT ATCTCGATGC GTTGCCGCTG GGACGCTCGC CGTCTGGATT GGTGCACGAC GCCAGCGGGC GCGCCGCTGC GATGGGCATA CCCACAGCGT CGCCAGGATT GACGCGACGC GGCGGATTGC CGATAGTCTG GGGAGAACAT CCGCGCAGCG GCGCGCCCGT CGTCTATGAC CGCTGGCAGG CGACGAACCC GCACATGCTC ATTGTCGCCG AGTCGGGAAG CGGAAAAACA TACACTATGG GCGGGTTGCT GGCGCAGGAA CTGGCGCTCG GCGAGGATGC GCTGCTCATT CTCGATCCAA AGCGTCAGGA GTACCGTCCG TTGACGACTG CGCTCGGCGG CGCCTACATT TCGCTGTCGA GTCGCGCCGG CTACCACATT AATCCGCTGG AACTGCCGCC ACTCGCGCCC GAACGCGCGC GCGCCGTCGC GGCGCTGGAA GAAGATCTGC TGGCGCAGCG GATCAGTGTG ATCAAAGCGT TGATCATCCG CGAATTGAAG GCGCAGGGCA CGCACATCGA CGCCACCGGC GCAGCCGCGA TTCAGGACGC CATTGCCGCA GCCTATGCCG AACGCGGCAT CAGCAGCGAT CCGCGCACAT TCGGGCAGCC AATGCCCACC TTCAGCGATG TGCAGCAGCA TCTGACGGCG ATCACACCCG ACCTGGCGCG CGCTATGACA CTGTTCACAC GCGGCATCAT CGGCGACCTT TTCAACCATC CATCGAACGT ACCGACCGAC AACCCGTTGC TGGCGATTGA CCTCTGGACC TTGCTCCAGA GCAATGATGA AACCCTTGCC CGATTGTTGC CGGTGATCGT GATGGACTTT TTCGTGACCA CGGCGATCAA CCGTCCAACC GGGCGACGCA GCCATCTGGT GCTCGACGAA GCGCATGCGC TGCTACACTC AGACGTGGGC GCGCGCACGT TGCAGATGAT TTTCCGCATC GGACGTAGCC TTCAGTTCAA AGCGACCGTC ATCACTCAGA GCCTCGACGA CCTGGATGAA AGCGAACAAA CGCGCGTGTT GCTGGAAAAT GCGCGCACCA AACTCATCCT GGGACTGAAC CAGGACTCCG ATGCGGTCAA CCGGGCAGCC GCCATTCTGC GCCTGAATGA AGAGGAAGCG GCGTATCTGG CGACGTGCCG GATCGAGCGT GGCATCGGCG CAACGGCATT GCTGCTGGCT GATGGCGAAC GCACACCGTT GTTCATTCCA AGATGGCCCG ACACAATCCA TCGGATTGTG ACTGGCGCAG GGAGCGACTG A
|
Protein sequence | MALRDALARP IIEPVRRRTA NAAFLSGTTT LTTLLAPDGI DRRWSHMIQV GDSFITTLEV RAFPPVLTLA WLDDPTLGLD SSGITVHQRL VPVPDALARR WLARSEDAAL GTLAGDAQAG THFDAEAQQG IEAAAALRHD LTAGTDRLFQ VAITITIAAA TPDELAARID RVRLAAAQQG ILLGSMQFQQ WEGYLDALPL GRSPSGLVHD ASGRAAAMGI PTASPGLTRR GGLPIVWGEH PRSGAPVVYD RWQATNPHML IVAESGSGKT YTMGGLLAQE LALGEDALLI LDPKRQEYRP LTTALGGAYI SLSSRAGYHI NPLELPPLAP ERARAVAALE EDLLAQRISV IKALIIRELK AQGTHIDATG AAAIQDAIAA AYAERGISSD PRTFGQPMPT FSDVQQHLTA ITPDLARAMT LFTRGIIGDL FNHPSNVPTD NPLLAIDLWT LLQSNDETLA RLLPVIVMDF FVTTAINRPT GRRSHLVLDE AHALLHSDVG ARTLQMIFRI GRSLQFKATV ITQSLDDLDE SEQTRVLLEN ARTKLILGLN QDSDAVNRAA AILRLNEEEA AYLATCRIER GIGATALLLA DGERTPLFIP RWPDTIHRIV TGAGSD
|
| |