Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1251 |
Symbol | |
ID | 5538723 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1617715 |
End bp | 1619538 |
Gene Length | 1824 bp |
Protein Length | 607 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640893389 |
Product | cyclic nucleotide-binding protein |
Protein accession | YP_001431366 |
Protein GI | 156741237 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGATCAAT TCCATCGCCT CTGGCCCTTT GTGCGGCGCT ACCGTCGCCG GTTGCTGATC GGCGCGCTGT GCGCCATGGC AGCCACCGCC GTCGCCGCGA TGATTCCGCA GATCGTGCGC TTTGCCGTCG ATGACCTGAA TACGCGCGGC GTTGTGATCG AGCGGTTGCT CCAGTACGGC GGATTGCTGT TGCTCGCTGC GCTCGTGGAA GGATTGTTGC GCTATGGACA GCGCACTCAG ATCATCGGCA CGTCGCACCT GATCGATTTC GATATGCGCG AAGCGCTATT CGCCCGATTG TTAACGCTCG ATCAGGGATT CTTCACCACA ATGCACACCG GCGACCTCAT GACGCGGGTG ACGAACGATC TCTCGGCAGT GCGTATGTTC CTTGGTCCTG GCATCAGCAA CCTGCTTGGT TCGACGCTGC TGCTGCTGAC CGCCGCGACG CTGATGTTTC TCACGAATCC GGCGCTGGCC GCAATCGTCG TGCTGCTCCT GCCGATGGCG GCAGTGCTGT TCGTCGTCAT CGGCGGACGT ATGCGCGCGA TCTTCCGCAA GGTGCAGGAT CAGTTCGGTG AGATCTCAAC CCGCGCTCAG GAGAATTTCA GCGGCATCCG CACGATCAAG GCATATGCCC AGGAAGATGC TGAGATCAGG GTGTTTCGGC AAGCCAATGA ACGCTACCGC GCGCTCAATC TGCGCTATGT GCTGCTCAGC GGCATGCTCT GGCCCATCAT TGGGTTGATG CTGGGGACAA TCGGCGCTTT TGTGCTGCTC ATCGGCGGGC GCATGGTTGC AGCCGGCGAG ATGACCGTTG GTGAACTGGT GTTGTTTAAC GCCTACCTGG CACAACTCGC ATGGCCCGTT ATCGCTCTTG GGTGGACGGT GGACCTCTAT CAGCAGGGTG CGGCATCGCT GGTGCGCATT GGCGAGGTGC TTCAACGCCG TTCTGCCATA GCCTCGCCGC CCGATGCGCC GCGCGATTTC GTGGTGCGGG GAGAGGTCGA GTTTCGCAAT GTCGGGTTGC GCTTCGCGCA CAGCCAACAT ACGAATGGCA ACGCATCCGG GCATCACGCG AATGCGCCTT CGACGTCCGG AAAGCCAGCC GCCTCCGGTG CGCCGGAATG GGTGCTGCGC CATATTTCGT TCCGCATTCC GCAAGGGGGG TCGCTGGGGA TCGTCGGCGC AACCGGCGCC GGTAAGACGA CCCTGGTCAA CCTGCTGGCG CGGGTGCGCG ACCCGGACGA GGGGCAGGTG CTGGTTGACG GGTATGATGT GCGCACCCTG CCCCTCGATG CGCTGCGCCG CGGCATCGGC TATGTGCCGC AGGATACGTT CCTGTTCAGC GTGCCCATCC GCGAAAATGT GACCTTCGGC AGACCGGACG CGACGGAGGA TCAGATCATC CACGCCCTCG CCGTTTCGCG GCTGATCAAT GATGTGGAGC AGTTTCCCGA CGGGATCGAC ACCCTGATCG GCGAGCGTGG CGTGACGCTG TCCGGCGGGC AGAAGCAACG CACTGCCATT GCCCGCGCCA TCCTGCGCGA CCCGGCAATC TTGATTCTCG ACGATGCGCT TTCGAGTGTC GATACCCACA CTGCCGCCGA GATTCTTGCC AGCCTGCGCG CGATGATGAA GGGGCGCACC AGCATGATTA TTGCACAGCG CATCGCGACG GTGAAAGACG CCGATCAGAT CATCGTGCTG CACAATGGTG AAATCATCGA GCGTGGCACG CACCGCGAAT TGGTTGAACG CGGCGGACGG TACGCCGATA TGTACCGTCG CGAGTTGCTG CGCGCCGAGT TGGAGGAAGA GTAG
|
Protein sequence | MDQFHRLWPF VRRYRRRLLI GALCAMAATA VAAMIPQIVR FAVDDLNTRG VVIERLLQYG GLLLLAALVE GLLRYGQRTQ IIGTSHLIDF DMREALFARL LTLDQGFFTT MHTGDLMTRV TNDLSAVRMF LGPGISNLLG STLLLLTAAT LMFLTNPALA AIVVLLLPMA AVLFVVIGGR MRAIFRKVQD QFGEISTRAQ ENFSGIRTIK AYAQEDAEIR VFRQANERYR ALNLRYVLLS GMLWPIIGLM LGTIGAFVLL IGGRMVAAGE MTVGELVLFN AYLAQLAWPV IALGWTVDLY QQGAASLVRI GEVLQRRSAI ASPPDAPRDF VVRGEVEFRN VGLRFAHSQH TNGNASGHHA NAPSTSGKPA ASGAPEWVLR HISFRIPQGG SLGIVGATGA GKTTLVNLLA RVRDPDEGQV LVDGYDVRTL PLDALRRGIG YVPQDTFLFS VPIRENVTFG RPDATEDQII HALAVSRLIN DVEQFPDGID TLIGERGVTL SGGQKQRTAI ARAILRDPAI LILDDALSSV DTHTAAEILA SLRAMMKGRT SMIIAQRIAT VKDADQIIVL HNGEIIERGT HRELVERGGR YADMYRRELL RAELEEE
|
| |