| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0555 |
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| Symbol | |
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| ID | 5538018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 737240 |
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| End bp | 742033 |
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| Gene Length | 4794 bp |
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| Protein Length | 1597 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640892717 |
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| Product | laminin G, domain-containing 2 |
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| Protein accession | YP_001430703 |
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| Protein GI | 156740574 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTACTC GTTTGTGGGT GGTGGGGTCG TTCATTGGCG CTCTCCTGTT GATTGCGTTG
GCAGCGCCAT CGGTGAGCGA AGCGACGATT CCCAATCGTC AACTCTGGAC GCATGCGCCA
GGAACGTGTG GTCCTGCGCT GGGAGGCGCG GTGTTCGGTC GTGCTGGCGA TAATTGCGGC
GGAAGCGGTA CGACCTTCGA CAGCGTCAAT GTCGAAAGTC CGGTCATTCT GCGCGATATT
GCCACTGCGG CTGCGCCATG CCCCGGCATT GCCGAAGGCG GTGTGTGTTA CCGCATGTGG
TATACCGGCT TCGACGCTGG TGGTGTGCGA CGCATCGGCT ATGCCGTTTC GCCGGATGGC
GCAACCTGGA CGCGCGTGCC GGGGTCCGCA GGCGGCGGCG CGGTGCTCGG TCCTGGACCG
GCGGGCAACT TCGATAACGC TGGCGTCTCG TTTCCGTATG TCATTCGTAA CGGCGCCGTC
TTCGAGATGT GGTACAACGG CTTTAACGGC TCGGTCTTCA CGATTGGCTT CGCCACCTCG
ACCGACGGTG CGACCTGGAC GCGCGTCGCA GGACCGCTGA CTCAGGGCGC CGTCCTGCGT
CCGACCAGCG CCGCCACATT CGATCAGGCG ATTGTTGCCG CTCCCGCCGT GATCCGCGAT
GAAGCCTCGC CGCAACTCCC CTGTGAGAAT GGGCGCACGA GCGGCGTGTG TTATCGGATG
TGGTATCAGG GCACTGACGC GGCAAATGTC TTTCGCATCG GCTACGCCCT TTCGCCCGAT
GGCGTGAACT GGATGCGCGC AGCGGGTGGG AACCCGGTGC TCGGTGTCGG CGCGGCCGGC
GAATGGGATG CGGGCAGCGT CGGTGCGCCG GTGGTGTTGA AGGATGGCGC GCTCTTTCGC
ATGTGGTACA ACAGCCAGGC GTCCAACCAG AGTATCGGGC ATGTGGTATC GACTGACGGC
GTGACGTGGG TGCGTCCGGC GCCAAACCAG GCAGTGTATC GCGGCGCCGA TGATCCAGGG
ACGCTTTCGC CCGACAATGT GTGGACGCCG TTTGTCATAA AGGAAGGTGC CGCCTTCCGC
ATGTGGTACA CGGTCAGCAG CCGCCCGAAT GCCGTGCGCG TTGGTCAGGC GACCATGACG
CCGGGAATGT TGCTGCCTGC GCCGGCGTTG AGCCGTGACC TTGGTGAATA TACCCTGTTG
CTGACTACTC AGATGATCCC CCCGGGTGGC AGTGTGCTGC TGATGTTGCC CGCTTCCGTG
CCGTTCGCCG ATGTGACCGT GGGAACGATG TCCGGCTTTG GCGCCGGTGC GACCTTCACT
GCCGAACGTG CGGCAGTGAC CGATGCGTTT GCGCAGGGAA CGGCGCGCGG TGCACTCGTC
ATCCGCTTGC CCGACGGCGC CCCCGCAGGC GTCAAGACGA TCACATTCAC ACTGGCAAAT
CCGCCCTCAA CGCCCGCCAT TATGACAGTG CAGACGTTCG ATGTGCGCGA AGTGATCGAG
TACGCAACCA TCGATCTGTC ACAGGCGACG AATGTCGGTC CAACTGCAAC GCCAACGCCT
GTGCCGCCGT CCCCGACGTC GGCGCCGCCG ACTGCGACCG CCACAGAGGG ACCAACAGCA
ACGGCGACCA GTACGCCGAC CCCGACAGAT ACCCCACAAC CGCCAACGGC GACCAGCACA
CTCTTGCCAA CCAACACCCC GCAACCGCCG ACGGCAACCC CGGCGCCGAC CGCCGATCCG
TCGAACCGTC AGCCATGGTT GCACATCCCC GGCACATGCC CGGTATCCGT GGAAGGTGCA
GTCTTTACAA TTGCCGGACA GAACTGCGGC GGCGGCGGCA CAAGTTTCGA CACGTCGGAA
ATCTTCCCGC CGATGGTGCT GCGCGATACC GCCACGCCGG CGCTGCCGTG CGAAAACGGG
CGTACCGGCG GCGTCTGCTA CCGCATGTGG TATGTCGGCG TGGACGGCAG CGGGACGCGG
CGCATCGGTC ATGCCCTCTC GCCGGATGGC ATGACCTGGA CGCGCTTCAT TGGCTCAGGG
GTCGGCGGCA GTGTCTTCGA GCCGTCCGGC GTGCCCGGCG ACTTCGATAG CACTGGCGTC
TCGACCATGT ATGTCGTGCG TGATGGGAAC ACGTTCCGCA TGTGGTACAG CGGCTTTGGC
AATACTGGCG CAATTGAGGG TATCGGGTAT GCGACCTCGC CGGACGGCAT CACCTGGACG
CGCGTGCCGG GTACTGCCGG AACCGGCGCG CCGAACCGCA ACGCTGTTCT GGTCGAACGT
GGCGGCGTCA ATGACTTCGA TCAGGATTAT ATCGTCGCGC CTTCGGTGTT GATCGATGAA
GCCACTCCTG CGCTACCGTG CGAGAATGGG CGCACCAGTG GACGCTGCTA TCGGATGTGG
TATGAGGGCG TGAACAATGT CAGCGCTTAT GTGTTCGCCA TTGGCTATGC TGTATCGCCT
GATGGAATCA ACTGGACGCG GATTCCTGGC GGCAGCGGCG GCGCCGTCCT TGCGCGCATC
AATAATTTCA CCGATTTCGA TAGTAACAGC GTCGGCGTAC CGACGGTGAT CAAGGATGGC
GCGTTCTTCC GCATGTGGTA TGAGGCGAAA TCGTATGCCA CGCCAGCCTT CTCAACCGGG
TATGTCGTAT CGACCGACGG CGTCAACTGG GTGCGCCCAA TACCGAACAA TCCGGTCTTC
ACCGGCGCCG ACGATCCTGG CACGTTTTCG CCCGATGGCG TGTGGGCGGC GCGTGCGCTG
AAACTGGGCA GCAGTTACCG CAAATACTAT ACCGTCGGTT TGCGTCCCAA CGCTCGACGC
TTCGGGCTGG CGCAAATGAC GCCCGGCGCG CCGCTCGGCT CGGTCGCGCT GAGTGTGTCC
GGCAACCTGT ATACGCTCAG TTTTACAACT GCTTCCTTTA TTCCGGCTGG CGGCAGCGTC
CTGATCAGCC TCCCGCCGGA TGTCGATTTC GCGCAGGTAA CGCCGGGCGC GATCAGTGGC
TTTGGCGCGG GCGCAACGCT GGTTGCCGAC CCTGCGGCGG TGACCGATGC CGCCTCCGGC
GGCGTAGCAC GCGGCGCGCT CCTCATTCGC CTGCCCAATG GCGCGCCGGC AGGTCCGAAG
ACGGTGCAGT TCACTCTGGG CGCGCCGCCG CCTTCGACGG CGCCGCTGCT GGTGCAGACC
TTCGATCTGC GCGAAGTACT GGAGTATGGC GAAGTGCTGA TGGATGGAAC ACCGCCGCTG
GCTACGCTGA CCGCCACGCC TGCACCGCCA ACCAACACCC CCACGCCCGT ACCGCCAACG
GCAACGCCAA CCGCCGGACC GAGCGCCACG CCCACTGCGG TGACGCCAAC GGCGACAACG
ACGCCTTCCG GTAGTGGTGC GCTGCGCTTC GACGGGGTGA ATGATGAGGT GCGCGGCGGG
CAGATCGCCG GGCTTGGCGG CGCGCAAACC ATCGAACTCT GGGTGCGCCC GGCGACCGCT
GGGCAGAATA GCGTCATCAT CGCCCACAGC GACGACAACA CCGGCTGGTC GCTCGAACTG
AACGGCGGGC GCGTCACCTG GTGGGTGGCT TCGACTGGTG GCTGGCGCGC GGCGCAGCAT
CCGACGGCGC TGGTCGCCAA CACCTGGTAT CACGTTGCGG TGACGTATGA TGGCGCGACG
GCGCGGGTGT TCGTCAACGG CGCGCCTGGT TCAGCGGCCA CCATCGGCGC GATCACGCAA
GGACCGTTCC TGCGCATCGG CGGGCTGACG GGGTACGGCT TCTTCAACGG CGACCTTGAC
GATGTGCGCA TCTCGAACGT CGCGCGCTAC AGCGGCGCGT TTACGCCGCC GTCAACGGCG
CATCCGGCGG ATGCGAACAC GCGCGCGCTC TACCGGTTTG ATGAAGGGAG CGGGCAGACC
ACCAGCGATG CTTCGGGGAA CGGCTACCAC CTGACGCTTG GCGCAAGCGG CGGCGCCGAC
AGCGCCGATC CGTTGTGGGT GGCGTCCACG GCGCCGATTG CTCCACCGCC GCCAACCGCG
ACACCAACGC CGGTTCCGCC AACCAACACC CCAACCGCCA CATCGTTGCC GCCAACCGCC
ACACCCACCG GCACGGCAGG TCCAAACCCG ACGCCGTTTC CGCCAACCAA TACGCCGACG
GCAACCGCCA CTCCCATTCC GCCATCGAAT AACGCGCTGC GCTTCGACGG GGTGAATGAT
GAGGTGCGCG GCGGGCAGAT CGCCGGGCTT GGCGGCGCGC AAACCATCGA ACTCTGGGTG
CGCCCGGCGA CCGCTGGGCA GAATAGCGTC ATCATCGCCC ACAGCGACGA CAACACCGGC
TGGTCGCTCG AACTGAACGG CGGGCGCGTC ACCTGGTGGG TGGCTTCGAC TGGTGGCTGG
CGCGCGGCGC AGCATCCGAC GGCGCTGGTC GCCAACACCT GGTATCACGT TGCGGTGACG
TATGATGGCG CGACGGCGCG GGTGTTCGTC AACGGCGCGC CTGGTTCAGC GGCCACCATC
GGCGCGATCA CGCAAGGACC GTTCCTGCGC ATCGGCGGGC TGACGGGGTA CGGCTTCTTC
AACGGCGACC TCGACGATGT GCGCATCTCG AACGTCGCGC GCTACAGCGG CGCGTTTACG
CCGCCGTCAA CGGCGCATCC GGCGGATGCG AACACGCGCG CGCTCTACCG GTTTGATGAA
GGGAGCGGGC AGACCACCAG CGATGCTTCG GGGAACGGCT ACCACCTGAC GCTTGGCGCA
AGCGGCGGCG CCGACAGCGC CGATCCGTTG TGGGTGGCGT CCACGGCGCC GTAG
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| Protein sequence | MRTRLWVVGS FIGALLLIAL AAPSVSEATI PNRQLWTHAP GTCGPALGGA VFGRAGDNCG
GSGTTFDSVN VESPVILRDI ATAAAPCPGI AEGGVCYRMW YTGFDAGGVR RIGYAVSPDG
ATWTRVPGSA GGGAVLGPGP AGNFDNAGVS FPYVIRNGAV FEMWYNGFNG SVFTIGFATS
TDGATWTRVA GPLTQGAVLR PTSAATFDQA IVAAPAVIRD EASPQLPCEN GRTSGVCYRM
WYQGTDAANV FRIGYALSPD GVNWMRAAGG NPVLGVGAAG EWDAGSVGAP VVLKDGALFR
MWYNSQASNQ SIGHVVSTDG VTWVRPAPNQ AVYRGADDPG TLSPDNVWTP FVIKEGAAFR
MWYTVSSRPN AVRVGQATMT PGMLLPAPAL SRDLGEYTLL LTTQMIPPGG SVLLMLPASV
PFADVTVGTM SGFGAGATFT AERAAVTDAF AQGTARGALV IRLPDGAPAG VKTITFTLAN
PPSTPAIMTV QTFDVREVIE YATIDLSQAT NVGPTATPTP VPPSPTSAPP TATATEGPTA
TATSTPTPTD TPQPPTATST LLPTNTPQPP TATPAPTADP SNRQPWLHIP GTCPVSVEGA
VFTIAGQNCG GGGTSFDTSE IFPPMVLRDT ATPALPCENG RTGGVCYRMW YVGVDGSGTR
RIGHALSPDG MTWTRFIGSG VGGSVFEPSG VPGDFDSTGV STMYVVRDGN TFRMWYSGFG
NTGAIEGIGY ATSPDGITWT RVPGTAGTGA PNRNAVLVER GGVNDFDQDY IVAPSVLIDE
ATPALPCENG RTSGRCYRMW YEGVNNVSAY VFAIGYAVSP DGINWTRIPG GSGGAVLARI
NNFTDFDSNS VGVPTVIKDG AFFRMWYEAK SYATPAFSTG YVVSTDGVNW VRPIPNNPVF
TGADDPGTFS PDGVWAARAL KLGSSYRKYY TVGLRPNARR FGLAQMTPGA PLGSVALSVS
GNLYTLSFTT ASFIPAGGSV LISLPPDVDF AQVTPGAISG FGAGATLVAD PAAVTDAASG
GVARGALLIR LPNGAPAGPK TVQFTLGAPP PSTAPLLVQT FDLREVLEYG EVLMDGTPPL
ATLTATPAPP TNTPTPVPPT ATPTAGPSAT PTAVTPTATT TPSGSGALRF DGVNDEVRGG
QIAGLGGAQT IELWVRPATA GQNSVIIAHS DDNTGWSLEL NGGRVTWWVA STGGWRAAQH
PTALVANTWY HVAVTYDGAT ARVFVNGAPG SAATIGAITQ GPFLRIGGLT GYGFFNGDLD
DVRISNVARY SGAFTPPSTA HPADANTRAL YRFDEGSGQT TSDASGNGYH LTLGASGGAD
SADPLWVAST APIAPPPPTA TPTPVPPTNT PTATSLPPTA TPTGTAGPNP TPFPPTNTPT
ATATPIPPSN NALRFDGVND EVRGGQIAGL GGAQTIELWV RPATAGQNSV IIAHSDDNTG
WSLELNGGRV TWWVASTGGW RAAQHPTALV ANTWYHVAVT YDGATARVFV NGAPGSAATI
GAITQGPFLR IGGLTGYGFF NGDLDDVRIS NVARYSGAFT PPSTAHPADA NTRALYRFDE
GSGQTTSDAS GNGYHLTLGA SGGADSADPL WVASTAP
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