| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0485 |
|---|
| Symbol | |
|---|
| ID | 5537948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 626250 |
|---|
| End bp | 626927 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640892647 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001430633 |
|---|
| Protein GI | 156740504 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1434] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTC GGTCGATGGA TTGCAATACT TCGCCAGAGC GCCTGACCTC CGGGTATCGA
TCCCGGCAAT CGCGGCGCAT GTTTGTCCGC ATTGGCGGAG CAGCCCTTGC AACGATTGCG
CTCCTGGCAG GCAGCGCCGG ATGGTGGCTG CCGGCGCTCG GCAGTCTGCT GGCGTTGCCG
GGGCGGACGG CGCGCGCCGA TGCGATTGTG GTGCTGGGAG GCGGATTTCC GTTGCGCGAT
CAGCACGCTA TCGACCTCTA CCGCGAAGGA TGGGCGCGCG AAATCTGGCG CACTGGCGAA
ATGCCCGGCG GATCCGCCGT TGTGCAGAAA GCGCGGCGGC TGGCGATCCA GCAGGGTGTT
CCCGCCGCAG CATTCGTGCC ATTGATCACC GACAGCACCT GGACGGACGG GCGCGAGATT
GCGCGAATGG CGCGGGAACG CAAGGTCGAA CGGGTGATTA TTGTGACCGA CTGGTCCCAC
AGTCGGCGCG CACTGTGTGT AATCAAACAC CATCTGGCAG GTTCAGGGAT CGAGGCATTC
TACGACGGTC CACGCAACCC GCCCTACACC CCATTCGACT GGTGGCATCA TCCTGAAGGT
CGTCGTATCG TGGCGGGCGA ACTGCTCAAG ACGTTCTACT ATCTTCTGCG CTTTGGCGTC
ACTCCCTGGG AGTGTTAG
|
|---|
| Protein sequence | MKIRSMDCNT SPERLTSGYR SRQSRRMFVR IGGAALATIA LLAGSAGWWL PALGSLLALP
GRTARADAIV VLGGGFPLRD QHAIDLYREG WAREIWRTGE MPGGSAVVQK ARRLAIQQGV
PAAAFVPLIT DSTWTDGREI ARMARERKVE RVIIVTDWSH SRRALCVIKH HLAGSGIEAF
YDGPRNPPYT PFDWWHHPEG RRIVAGELLK TFYYLLRFGV TPWEC
|
|---|
| |