| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0423 |
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| Symbol | |
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| ID | 5537885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 535938 |
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| End bp | 538412 |
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| Gene Length | 2475 bp |
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| Protein Length | 824 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640892585 |
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| Product | alpha beta-propellor repeat-containing integrin |
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| Protein accession | YP_001430572 |
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| Protein GI | 156740443 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3889] Predicted solute binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.657056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCATC CCGCCATGTT CAGTGCGCGT CTTGCCGGCG TCCTGGTGAT CGCGCTGATT
GCGTTCTTGA CGCCCGTTCG TTTGGCGCTG CCGCAATCAT CCCTGAACTT CACGCAAACG
AAACTGACTG CCGCTGATGC CGCTCAGTAC GATTATTTCG GTCTGTCAGT CGCGCTTGCA
GGTGACACGG CAATCGTTGG CGCCTACGGC AAGTCGGACC TGGCGCCCAA CGCTGGCGCC
GCCTACGCTT TTGCCCGCAG CACTGCATCC TGGGTGCAGC AGGCGCGTCT TGGCATATCC
GATGTTCTGG CAGGCGCGTA CCTCGGCGCA GTAGTGGCGA CCGATGGCGT GCAGACAGCG
GTGGGAGCGC CGTATGCCGG CATTGATGCG CAGGATGCCG GCGCGGTTTA TCTCTTCTCG
AACGCTAGCT GGCAACGCCA GGCGATCATC ACTCCCGCTG ATCCTGAATC ACCGGCGCAG
TTTGGCGGCG CTATCGCAAT CGGTCAGAAC ACGCTGATCG TTGGTGCGCC GTTGCACGAC
TCCTACGGCA GGGATGCTGG CGCGGTCTAT GTCTTCGCCT TCGATGGCGT TGCGTGGGTG
CAACGCCAGA AACTGATCGG CGCCGATGTT GTTCCTGGCG ACCGCTTCGG CAGCGCACTG
GCGCTGAGCG ATGGCTGGCT TGCGGTCAGC GCGCCACTGC ATGGCGCGGG TGGGGCGGTC
TATCTCTTCG AATTCGATGG CGTTGCCTGG GTGCAGCGGC ACAAAGTGTC CGCTGGCGAC
ACGATTGCCG GAGATCGCTT CGGCAGCGCA CTGGCGTTGA ACAATGGCTG GCTTGCGGTT
GGGGCGCCAT TGCATCGCGT TACCGGCAGT TTCAGCGGAG CCGTCTATCT TTTTGAGTTT
AACGGCGCGT CCTGGCCGCA GCGCCAGAAG TTCGTAGCAA GCGATACGGT CGCCAGCGAT
CGCTTCGGTA GCGCACTGGC GCTTTCCGGT CAGCGACTCG TCGTCGGAGC GCCATTGCAT
AGTGCGAACG GACCTGCCAG TGGCGCAGTC TATGTGTTCG ACCGTAGCGG CGCAACCTGG
ATCGAACGCG CAAAACTGAT CGGCAGCGAC ACCGATAGCG GTGATCGCCT CGGTTGGTCG
GTTGACATCG ATGGCAATAC CATTATTGCC GGGGCGTATG GCGATGCGCT CTTTGGTCCG
GCAACCGGTG CAGCGTATGT TTTTGTCGAT GTGACCGGTG CAGGGGCAAC CAATACGCCG
TTACCGATCG TCACCGCCAC GCCAACGGCG ACGGCCACGC CAACGGCGAC GGCCACGCCA
ACGGCGACGG CCACGCCAAC GGCGACGGCC ACGCCAACGG CGACGGCGAC GGCCACGAAC
ACGGCCACGG CGACGCCAAC GGCGACGGCC ACTGCCACGA ACACGGCGAC GGCGACGGCC
ACACCAACGG CGAGCCACAC GGCGACGGCA ACGGCAACGG CGACGTCCAC TGCCACGAAC
ACGGCGACGC CAACGCCAAC GGCGACGCCA ACGGCAACGG CGACAGCCAC GAACACGGCA
ACGGCGACGG CCACTCCTGT GCCGACGGCC ACACCGACGG CCACGCCAAC GGCCACTCCT
GCGCCGACGG CCACACCGAC GGCCACACCG ACGGCGAGCC ACACGGCAAC GGCGACGTCC
ACTGCCACGA ACACGGCGAC GCCAACGGCG ACGCCAACGG CGACGGCCAC TGCCACGAAC
ACGGCCACGG CGACGGCCAC TGCCACGAAC ACGGCGACGG CGACGCCAAC GGCGACGGCG
ACGCCAACGG CGACGGCAAC GGCAACGGCG ACGGCGACGG CGACGCCCAC ACCAATGGCG
ACGGCCACAC CGTCACCGAC GGCAACCGTC ACGCCTGTAA TCCTGCGTCC GTTTCTCGCA
TGTGTTGCGC GGCGCGCACC GGCAGGTTAT GTCGCGCTCT TCGGCTACGA GGTGCAAGGT
GATGCGTCTG TGCAGGTTCC AATCGGCGCC GACAATCGCT TCAATCGCTA TCGAGAGAAC
CTTGGGCAGC CGACGACCTT CGAGCCAGGG AAGCGCAGAG TTGCATTTGC GGTGGTTTTC
GATGGTCTGC CGCTCACATG GTCGCTGAAT GGGCAGACAG TCACGGCTCA TGCGAATTAT
CCGATCCGCT GTGGCAGCGA TGCCGTGCTC CGTATTCAGC CCATTCTGGA ATGCACGCTG
CCCGATGGCA ATGGCGCTTC GATTGCGCGG TTCGGCTATC GGAACGATAA CGCCTTCAAT
GTTGCCGTGC CCGTTTGGTG GCAGAATTTC TTTGTTCCGC GACCGATCCA ACGCGGCCAG
CCAATCGTAT TTGCGCCCGG TCGTCATCGG AATGTTTTCT CAACCGGTTT CTCACAGGGG
GCGTTGGTGT GGCTCCTCGA TGGACGGATC GCGGTAGCGA CCGACTCGCC GGTGCAGGCG
TGCCGGTTCA ACTGA
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| Protein sequence | MRHPAMFSAR LAGVLVIALI AFLTPVRLAL PQSSLNFTQT KLTAADAAQY DYFGLSVALA
GDTAIVGAYG KSDLAPNAGA AYAFARSTAS WVQQARLGIS DVLAGAYLGA VVATDGVQTA
VGAPYAGIDA QDAGAVYLFS NASWQRQAII TPADPESPAQ FGGAIAIGQN TLIVGAPLHD
SYGRDAGAVY VFAFDGVAWV QRQKLIGADV VPGDRFGSAL ALSDGWLAVS APLHGAGGAV
YLFEFDGVAW VQRHKVSAGD TIAGDRFGSA LALNNGWLAV GAPLHRVTGS FSGAVYLFEF
NGASWPQRQK FVASDTVASD RFGSALALSG QRLVVGAPLH SANGPASGAV YVFDRSGATW
IERAKLIGSD TDSGDRLGWS VDIDGNTIIA GAYGDALFGP ATGAAYVFVD VTGAGATNTP
LPIVTATPTA TATPTATATP TATATPTATA TPTATATATN TATATPTATA TATNTATATA
TPTASHTATA TATATSTATN TATPTPTATP TATATATNTA TATATPVPTA TPTATPTATP
APTATPTATP TASHTATATS TATNTATPTA TPTATATATN TATATATATN TATATPTATA
TPTATATATA TATATPTPMA TATPSPTATV TPVILRPFLA CVARRAPAGY VALFGYEVQG
DASVQVPIGA DNRFNRYREN LGQPTTFEPG KRRVAFAVVF DGLPLTWSLN GQTVTAHANY
PIRCGSDAVL RIQPILECTL PDGNGASIAR FGYRNDNAFN VAVPVWWQNF FVPRPIQRGQ
PIVFAPGRHR NVFSTGFSQG ALVWLLDGRI AVATDSPVQA CRFN
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