Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0121 |
Symbol | |
ID | 5537581 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 143241 |
End bp | 144605 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640892286 |
Product | histidyl-tRNA synthetase |
Protein accession | YP_001430275 |
Protein GI | 156740146 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0124] Histidyl-tRNA synthetase |
TIGRFAM ID | [TIGR00442] histidyl-tRNA synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAGCC GGGTTCAGAA CATTCGAGGC ATGCGCGATC ACCTGCCATC CGCCATGATC CTGCGGCAGC ACATTATTAA CACGCTGACT TCCGTTTTTG AGCGTTATGG TTTTGAGCCG TTGCAGACGC CAATTGTCGA ATATGCCGAA ACGCTCGACG GCAAAATCGG CGATGATGAG AAGTTGATCT ATCGTTTCGA GGATCACGGC GGGCGGAAGG TGGCGTTGCG CTACGATCAG ACGGTGCCGC TGGCACGGGT TGTCGCGCAG TATCAGGGGC AACTCACGTT TCCATGGCGG CGTTATGCCA TTGGTCAGAG TTATCGCGGT GAACGTCCTG GTCGTGGCCG CTACCGCGAG TTGTGGCAGG CTGATATCGA TATCGTCGGA TCGGCGTCGC CGGTGGCGGA CGCCGAGATT CTTGCAGTGT TGACCGATGC GCTGACCGCG CTTGGATTCA CCGGTTTTAC GACCCTCATC AGCCATCGTC AGGTTCTTGG CGGCATCGCG CGCGTTTCTG GTCTTGATGA TGCATCCGCC GGCAATGTCT ACCGCGCCAT CGACAAACTC GACAAGATTG GCATTGATGG CGTGCGCAAC GAATTGTTGC AGAGCGGCGT GACGCCTGAC GCCGCTGAGC GCATTCTGGC GCTGATCGAT CTGTATGGCA GCGCGGACGA TGTGCTGAAT GAACTGGCGC AGCGGTTGCA CGACGACGAG CGGGCGCAAC AGGCAATCGA CAATCTGCGC GCGATCATCG GCTATGCGCG CGCTATGGGC GTGCCTGAGG AGCGGATCGC GATCGCACCG CGCCTGGCGC GCGGGTTGTC GTACTACACC GGCGCCGTCT TCGAATCGAT CATCCAGGAG CCGCCGATGG GGTCGCTGCT CGGCGGCGGG CGCTACGATG AGTTGATCGG CATGTTCGCC GGGCGCTCGA TCCCTACGGT CGGGCTGGCG TTTGGCATCG AACGGTTGCA CGATGTGATG GAAGCATTGG GAATGGGACC GGAGTCACGG ACTATTGCGG TGGCGCTGGT GACGCTCTTC AACCCTGAGA TGGCGATGGA GAGTCTGGGT TTGGCGCAGG AGTTGCGCCG GGCAGGGTTG ATGATCGAGA CGACGCTCGA CCCCTCCGAA AAACTTGGGC GGCAACTCCA GTATGCGGAC CGACGCGGCA TTCCGTATGC GCTGGTGCTT GGTCCCGATG AACTGGCGCG CGGAGAAGTC GTTGTGAAAC ATCTGCGCAG TGGTGAGCAA CGGAGTGTGG CGCGCAGCGC CGTTGCCGGC ATGCTGCACG CGGCTGCGGA AGCGCAGCGC ACCCCGCGAA TAGCGAATGA GCAGGGAGGC ATCCATGAGC GATAG
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Protein sequence | MSSRVQNIRG MRDHLPSAMI LRQHIINTLT SVFERYGFEP LQTPIVEYAE TLDGKIGDDE KLIYRFEDHG GRKVALRYDQ TVPLARVVAQ YQGQLTFPWR RYAIGQSYRG ERPGRGRYRE LWQADIDIVG SASPVADAEI LAVLTDALTA LGFTGFTTLI SHRQVLGGIA RVSGLDDASA GNVYRAIDKL DKIGIDGVRN ELLQSGVTPD AAERILALID LYGSADDVLN ELAQRLHDDE RAQQAIDNLR AIIGYARAMG VPEERIAIAP RLARGLSYYT GAVFESIIQE PPMGSLLGGG RYDELIGMFA GRSIPTVGLA FGIERLHDVM EALGMGPESR TIAVALVTLF NPEMAMESLG LAQELRRAGL MIETTLDPSE KLGRQLQYAD RRGIPYALVL GPDELARGEV VVKHLRSGEQ RSVARSAVAG MLHAAAEAQR TPRIANEQGG IHER
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