Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0115 |
Symbol | |
ID | 5537575 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 138018 |
End bp | 138929 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640892280 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001430269 |
Protein GI | 156740140 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.013229 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTGTGT TCTCTGTGCC GCGCCTGCGC GCCAATGCGC GCGAGTGGCG TGAAAGCGTA TTGTTTCTCC TGTTGGTAGG ACCGAACCTG CTGCTGCTCG CAGCATTTAC GTTCTGGCCC ATGATCTACA ACGCCTACCT GAGCACGATC AGTTGGAACT TTCTCAGCCC GATCCGCCGT TTCGTCGGTC TGCGCAACTA CGAGACCGTC CTGAGCAGCG AGATTTTTCG TGTCGTGTTA ATCAATACCG CAGTGTTTAC GGTTGTGTCG GTGGCTGCCA CGATGGCGCT CGGTCTGGGG CTGGCATTGC TGTTGAACCA ACCGCTGCGC TGGCGCGAAG GCACGCGGGC AGTGCTCTTC ACGCCAACCG TTCTTTCGGG TGCGGCGATT GCGATTGTCT GGATCTACAT CTTCGATCCG CGTTTCGGGC TGCTGGCGCA GATCCTCGGC TGGTTCGGCA TTCTTTCGCC GAACTGGCTT GCCGATCCAA ACTGGGCGAT GACGGCGCTC CTGATCGTCT ATATCTGGAA AAATACCGGC TATGCCGTTG TCATCTATCT GGCAGGATTG CAGACAATTG ACCGGACGCT CTACGAAGCA GCCCGGATCG ACGGCGCCGG ACCGTGGGGG CAATTCTGGC ATGTGACGCT TCCCGGTCTG TCGCCGATCA TCTTTTTCCT GCTGGTGACG AGTATTCTGG CATGCTTCCA GGCGTTCGAC ATTATTCGGG TGATGACCGA CGGCGGACCG GTGAACGCCA CCAATATGCT GGTGTACCAC TTGTACGAAC GCGGTTTCAT CCAGTCGCAG GCTGGACCGG CAGGCGTCGT GGCAATGGTG ATGTTTGTCC TGATGTTGAT CCTGACCCTC CTGCAATTGC GATTTCTAGA GCGACGGGTG CATTACAGTT GA
|
Protein sequence | MSVFSVPRLR ANAREWRESV LFLLLVGPNL LLLAAFTFWP MIYNAYLSTI SWNFLSPIRR FVGLRNYETV LSSEIFRVVL INTAVFTVVS VAATMALGLG LALLLNQPLR WREGTRAVLF TPTVLSGAAI AIVWIYIFDP RFGLLAQILG WFGILSPNWL ADPNWAMTAL LIVYIWKNTG YAVVIYLAGL QTIDRTLYEA ARIDGAGPWG QFWHVTLPGL SPIIFFLLVT SILACFQAFD IIRVMTDGGP VNATNMLVYH LYERGFIQSQ AGPAGVVAMV MFVLMLILTL LQLRFLERRV HYS
|
| |