Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0015 |
Symbol | |
ID | 5537472 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 14871 |
End bp | 16382 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640892180 |
Product | cell envelope-related transcriptional attenuator |
Protein accession | YP_001430172 |
Protein GI | 156740043 |
COG category | [K] Transcription |
COG ID | [COG1316] Transcriptional regulator |
TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0348648 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000779954 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGACCGAT CAACACTCGA CTGTCGTGAA GCGCGGCGAT TGATCGATAT CGGCATTGCC CCAGGCGCCG GGCGCCCTGA TCGTCGCGCC CTGGGATTCC ATCTTGCCGG CTGCGCAGCC TGCCGCACCT ATCGCGCGCA CAGGGGCGAT GCGCTGCTCG CTGCGCTGCT GGAAACGCCG CCCGATCCCG GTTCCTCCCC GGCAACGCAA CCTCCGCAAC AGTTACCGCG TGCGATACGG ATGATCCGCT TGGCGAGCCT GACACTGACC GGAGTCGCTG CTATCCTGGG TCTGCTCTTC GTCGGACGTC TGGCAATCGC CTTTGCCTCA ATTGCAGGCA GTATGAGCGC AATGGCAGGA CGAGCCGACC AAACGCAGAT CGCTCCACCT GCGACAATCC CGTCGGAACT GGCGACTCTC GTCCCGCCGA CGGTGCCGCC GCCTGCCTGG ATATACGCCC CCGCGACGAC ACCGGTGTTT CCTTTGGAAA CTGCGACACC GATGCGTATG ATCGAACCCA CGGAACCGGC GCGTCCGACC GTTGCGGAGG CGCCGGTCGT CCCGGTTGCG TCATCGCCGA CGATCGTCGC GCCATCGTCG ATTTTGCCGA CCATCACACC CATTCCGCTG CGCCCCGATT ATCGTCCCGG GGCGCCGACT CCCCCGTTGG TTCCGCTCCC CACGCTGTCG AACATTCCTC AGCGCGCGCC GCCGCCAGGG ACAGCGATCA ATGTGCTGCT GCTGGGCATC GACCGGCGAC CGGGCGAAAC GTTCCCGGCG CGCGCCGACG CCATTATCGT AGCGCGCATC GAACCGGAGC GCCGCCGTGT TGCCTTGCTC TCACTGCCGC GCGACCTGGT GGCGCCGATT CCGGGATGGG GGTGGTCGCG GATCAATGCT GCGTCCGTCT ACGGCGAACT CAACCCGACG CTCGGTGGAG GCGTCGCGCT CACGCGGCGC ACGATCAGCG AGTTTCTTTC TATCCCTATC GATTACACCG TTACCGTCGA TTTTACCGGC TTTATCGGCG CGATCGACGC GATTGGCGGC GTGACGATTG ATGTGCCGGT CGAACTCTAT GATCCACTCT ATCCGACAAT GGACTACAGA TACACGGTTG CGCACTTTCG CCCTGGCATC CAGCATATGG ACGGCGCGCG CGCGTTGATG TACGCCCGTA TCCGACATAT GGACAGCGAT TGGGAACGGA TGAAGCGTCA GCAGGCGGTC ATCATTGCGG CGCTCGCACA GGTGCGTGAA CAGAACGTCG TCGGGCGCCT CGAAAGCATT GCAGCGTCGA TGACCGCGTT ACGCGGCTAC GTGACCACTG ATATTCCTGA AACGCAACTG CTCGGTCTGG CGTGGGCATT CCGCGACTTC ACACCCGATC AGATCGAACG CTACACATTC GATGCCAACT ACGTCAGCAC CGGCGCACCG GACGATCCCT ACGCACAGTA TGCGCTGCCA GGAGCGGTTG ACGATCTGCG CGCGCGTTTG CTGGGGCAGT GA
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Protein sequence | MDRSTLDCRE ARRLIDIGIA PGAGRPDRRA LGFHLAGCAA CRTYRAHRGD ALLAALLETP PDPGSSPATQ PPQQLPRAIR MIRLASLTLT GVAAILGLLF VGRLAIAFAS IAGSMSAMAG RADQTQIAPP ATIPSELATL VPPTVPPPAW IYAPATTPVF PLETATPMRM IEPTEPARPT VAEAPVVPVA SSPTIVAPSS ILPTITPIPL RPDYRPGAPT PPLVPLPTLS NIPQRAPPPG TAINVLLLGI DRRPGETFPA RADAIIVARI EPERRRVALL SLPRDLVAPI PGWGWSRINA ASVYGELNPT LGGGVALTRR TISEFLSIPI DYTVTVDFTG FIGAIDAIGG VTIDVPVELY DPLYPTMDYR YTVAHFRPGI QHMDGARALM YARIRHMDSD WERMKRQQAV IIAALAQVRE QNVVGRLESI AASMTALRGY VTTDIPETQL LGLAWAFRDF TPDQIERYTF DANYVSTGAP DDPYAQYALP GAVDDLRARL LGQ
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