| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0311 |
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| Symbol | oprM |
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| ID | 1222443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 406531 |
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| End bp | 407961 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637240171 |
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| Product | outer membrane CHANEL lipoprotein |
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| Protein accession | NP_521872 |
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| Protein GI | 17548532 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.564157 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.11877 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACTGC GCATCCTTCC CCTCGTCCTG GCACTGTCGG CCTGCTCGCT GCCCCCCGCG
CTGATCAAGC CTGCGCTGCC GGTGCCCGCG ACCTTCCCGG CGGAGTCGGG TCCTGAAACA
CAAGCGCATG CGGCCGATCT GGGCTGGCGC ACGATGTTCG GCGACCGCCG CCTGCAGCGG
CTGATCGGAC TCACCCTGGC CAACAACCGC GACCTGCGGC TGGCCGCACT GAACGTCGAG
ACGGTCCGGG CCCAGTACAG CATCCAGCGC GCCGCGCGGC TGCCCGGCAT CGACGCCACG
GGCAGCGCCT CGCGCCAGCG CACCGCCGCG AATGACGGCG CCAGTCCTGC CGCCCTGGCG
GCCAATTCGG AACAGTACGG CGTCAACGTC GGGCTGAACG CATTCGAGAT CGACCTGTTC
GGCCGCGTGC GATCGTTGTC CGATGCAGCG TTCGCCCGCT ACCTGGCGAG CGACCAAGGG
CGCCGGGCCG CGCAGATCTC GCTGGTCGGC GCGGTGGCCG ACGCCTACTT TGCCGAGCGG
CTGGCGCAGG AGCAACGGCA ATTGGCCGAG CATACCCTGG CCGATTGGCG GCAATCGCTC
GACTTGGCGC GCCGGTTGAA GACGGCCAAG CAGAACAGCG ACCTGGACGT CGCCCAGGCT
GAAGGCCAGG TCGCCAACGC GCAGGCCGAT CTGGAGGCGC GCACGCGCGC GCTGGCGCAA
GCCGGCAATT CACTGCAGCG CCTCGTCGGC GCCGGGTTGC CGGCGGATCT GCCGGCCCCC
CTGTCATTGG AAACGCAGCC GGTCGTGACC CAACTGCCGG CAGGCTTGCC ATCGGAGTTG
CTGATCCGCC GGCCGGACAT CCGCCAGGCC GAGCACAACC TGGCGGCCGC CAATGCCGAC
ATCGGCGCCG CGCGCGCCGC GTTCTTCCCG CGCCTGTCGC TGACCGCGTC GCTGGGCTAC
GCGAGCCCGG CCATGGGCAG CCTGTTCGAT GGTGGGCATC GGGTCTGGTC CTTCTCGCCG
CAGATCACGC AGCCGCTGTT CCAGGGCGGC AGGCTGCGCG CCGAACTGCG CCTGGCCGAG
CTGCGCAAGT CCAGCGCCAT CGCCGAATAC GAGCGCACCA TCCAGACCGC GTTCCGGGAG
GTCGCTGATG GCCTCGCCGG ACGTGCGACC TATGGTCGCC AGATCGAAGC CCAGATCCGG
GCGGTCGCCA GCGCCGAGCG CCGCGTCGAG CTCTCCAACC TCCGCTATCG CGCGGGCGTC
GAAGGACGGT TGGAACTGCT GGATTCCCAA CGGCAGCTGT ACGCATCGCG GCAAGCGCTG
CTGGACCTGC GGCAAGGCGC GTTCAGCAAC GCGGTCGCGC TCTACAAGGC GTTGGGCGGC
GGCCTGGCGG AAACGGACGT TGCAACCGCC GACCGCGTGG CCAGGAAGTG A
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| Protein sequence | MRLRILPLVL ALSACSLPPA LIKPALPVPA TFPAESGPET QAHAADLGWR TMFGDRRLQR
LIGLTLANNR DLRLAALNVE TVRAQYSIQR AARLPGIDAT GSASRQRTAA NDGASPAALA
ANSEQYGVNV GLNAFEIDLF GRVRSLSDAA FARYLASDQG RRAAQISLVG AVADAYFAER
LAQEQRQLAE HTLADWRQSL DLARRLKTAK QNSDLDVAQA EGQVANAQAD LEARTRALAQ
AGNSLQRLVG AGLPADLPAP LSLETQPVVT QLPAGLPSEL LIRRPDIRQA EHNLAAANAD
IGAARAAFFP RLSLTASLGY ASPAMGSLFD GGHRVWSFSP QITQPLFQGG RLRAELRLAE
LRKSSAIAEY ERTIQTAFRE VADGLAGRAT YGRQIEAQIR AVASAERRVE LSNLRYRAGV
EGRLELLDSQ RQLYASRQAL LDLRQGAFSN AVALYKALGG GLAETDVATA DRVARK
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