Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3430 |
Symbol | |
ID | 1222294 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3701304 |
End bp | 3704069 |
Gene Length | 2766 bp |
Protein Length | 921 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637239847 |
Product | putative VGR-related protein |
Protein accession | NP_521549 |
Protein GI | 17548147 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTCG CGGGAAATAC GAACATCCCC GGCAGCGGCA CTGGAGGCGC GCTGGCGGGA GGGCTCGGCA ACGTCGGCAC AATCGCTGGC ATGGCGGGAC AGATCGGTGC GCTGGCGGGT ATGCCGGGCG CCGGGCTCAT CGGCGGCGCC GCGAGTGCGA TGCAGCTAGC CCAGACCGGC CTGTCACTGC TGGGCAAGAC CCCCGAATCC ATCGCCGATG TCATCAACAG TGCGACCGGT GCGCGTGCGC TGCTGACGCA GGACTTCCGT TACATCACCA TTGAAACGCC GCTGGGCGCG GACGTCCTGC TGGTGAGCGC ATTGGTGGCA GACGAACATG TCAACCAGTT GCCCGAGATC CACCTCGACC TGCTGTCGCA CCGGAACGAT ATTGGCTTCG AGGAGATCGT CGGCCAGCGC GTCAAGATCA TGCTTGACCC TCGGAGCCGC AACACCAGCC TCGCAAGCAT CGTCGCCGGC GCCGACCCCG GTAGCGAGCG CCGTTATTTC GACGGCTACG TGGCATCGTT CGGGCGTGTC GGCAACCCCG GCGCGGTCAC GCGCTACGAA ATGACAGTGG TGCCGTGGTT CTGGTTTCTG ACCCGCTCAA CCGATTGCCG GATTTTCCAG AACCAGAGTG CGCAGGACAT TCTTGGGTCG ATTTTCCAGG AGCTCGGATT TTCCGATTTC GAGTTTCATC TCTGGGGCAA TCATCCAACG CTGGAGTACG TCGTCATGTA CGACGAGTCG TACTACAACT TCTGCGCGCG GCTGATGGAG CAGGAGGGGC TTATCTGGAC GGTCCGCTAC GAGCAGGACA AGCATGTGCT CGTGATCGGC GACGCCAACA CCATGTTCCG GCAGATCCCA AGTCTGGCTG CCGTGCCCTA TTACGCGGAC AGCGCCGCGA GCGAAATGAA CGGTATCGCC CGCTGGGACG AGGCGTTCCA ATTCCGGGTG GGCAAGATCA CCTTCCGCGA CTTCAACTAC AACCAGCCCT CGTCAAGGCT GATGCACGTC GAGGAGCCGA CAACCCTCCA GCACGCCAAC ATCGGCGCCA CGGAGCGCTA TCAGTACCAC TCGCTCTATG ACCGGGGCGA GGACGGCCGG CGCTATGCGC GTTACGCGAT GGAGGCCGAA GAGGCTCAAG CGCGGCGCTT CAATGGTGCT GCTTTTGCCC AGGCCATGAC CACCAGTGCT CGCTTCACGC TCGTCAACCA CCCGGCGTCG CGCTACAACG GCAAGGAATT CATCATTCTG GGCGTACGAC ACGAGGCCGT GAACGACTAC ACCAGGCAGG CCGCCGAGAC GCCGTATCGC AACACGTTCA CGTGCCTGCC GTTCGACATC CCGTTTCGCC CCGCGCGTCG CACACCCAAG CCTTACATGC ACGGCACGCA GCCGGCCATC GTGGTTGGGC CGAAAGGCGA GGAGATCTAC ACCGACGGCA GTCGCGTCAA GCTTCACTTT CTGTGGGATC GGCGCGGCAG GCTCGACGGC TCGGATTCGA TGTGGGTGCG CGTGTCGCAG CCCTGGGCGG GCAAAGGTTG GGGCGGCTCC GCGATTCCGC GGATCGGGCA GGAGGTGGTC GTCGCCTTCA ACCAAGGCGA TCCCGATAAC CCGATTGTGG TGGGGCGCGT CTTCAACGGT GAATCGGGCA ACCCGTATCA CGGGTCAAGC GGCCAGACCA TGGGGATTCG CAGCCAGACG CACAAAGGCA CGGGTTTCAA CGAACTGCGG TTCTCGGATG TCAATGGCGC CGAGGAGGTG TTCGTCCACG CGCAGAAGGA CATGAACACC GTCATCAAGG ACAACGAGAC ACGTTCGATC GAAGCCGGCA ATCGCGCGAT CACGGTTCAC AAGGGAGACG AGGTCAAGCG TGTCGCGCAG GGCAACCTGA CGGAAACCAT CGCCAAGGCT CGTGGCACGA CAGCCAATAC GGTCAGCGTC CAGGCGCTTG CCGGTGACGC GGGGCCCGGC AAGCAAAGCT ATCAGGCGAC CGACGAGATC GAGCATCGCG TGGGCGAGAG CGTGGTGACG CTAAAGCCGG ACAGCATTCG GCTGACGCAT GGGGCGTCGA CCATCCTGAT CAATGCCAGC GGCATCTATA TTGACGGGCC GGTCATTCAT CTGAATCAAG GTACGGCTGC GGCGCCTGCC GCTGCGGGAA CTGGCGCCAC AGCGACTGCT GCGACTGCTG CCAGTGCGGT GAAAACTGGG CTTGGCGACG ACGTTGACGC ACTCGTCGCC CAATCCCCCA GCTTGCAGAA AGATTTGCTG CGGCTTGAGA AGGATGACTG GAAAATCAAG TATGGTGCCC CGGGAAAGGG CTCTTTTGCC ACTCGTGGGG ACGAGCAGAC CATCACGCTC GACGGCAACC TCAAAGGCAA CGCACTTGCT ACAACACAGA CCCTGGCACA CGAGGTCGGG CACGCAACGT ACGCGTTCAA ACCGGATTAC TCGTCGAAGG CTGCATATGT CAATGGCACA CTGGCAGACG AGGGCGCAGC AACCATGAAT AACGTCAAGA TTCAACGCGA AATCCTTGCC AAGGGTGGGC AGGATATCGG TATCGCTGGG AATAGTGCCA ATCATGCTGC CTACAACAAG GCATATGATC AATTCTTGAA GGATGGCAAC GCCGAGGCCG CTCGGCAGGC AATAGGAGCC CAATTCGGCA AAGGGGAAAT CACGTCCAAC ACACATCAAC CTTATGCCGA TTATTACGGA AGCACATATG ACAAATCGTT CCCGCCCAAG AAGTAG
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Protein sequence | MSFAGNTNIP GSGTGGALAG GLGNVGTIAG MAGQIGALAG MPGAGLIGGA ASAMQLAQTG LSLLGKTPES IADVINSATG ARALLTQDFR YITIETPLGA DVLLVSALVA DEHVNQLPEI HLDLLSHRND IGFEEIVGQR VKIMLDPRSR NTSLASIVAG ADPGSERRYF DGYVASFGRV GNPGAVTRYE MTVVPWFWFL TRSTDCRIFQ NQSAQDILGS IFQELGFSDF EFHLWGNHPT LEYVVMYDES YYNFCARLME QEGLIWTVRY EQDKHVLVIG DANTMFRQIP SLAAVPYYAD SAASEMNGIA RWDEAFQFRV GKITFRDFNY NQPSSRLMHV EEPTTLQHAN IGATERYQYH SLYDRGEDGR RYARYAMEAE EAQARRFNGA AFAQAMTTSA RFTLVNHPAS RYNGKEFIIL GVRHEAVNDY TRQAAETPYR NTFTCLPFDI PFRPARRTPK PYMHGTQPAI VVGPKGEEIY TDGSRVKLHF LWDRRGRLDG SDSMWVRVSQ PWAGKGWGGS AIPRIGQEVV VAFNQGDPDN PIVVGRVFNG ESGNPYHGSS GQTMGIRSQT HKGTGFNELR FSDVNGAEEV FVHAQKDMNT VIKDNETRSI EAGNRAITVH KGDEVKRVAQ GNLTETIAKA RGTTANTVSV QALAGDAGPG KQSYQATDEI EHRVGESVVT LKPDSIRLTH GASTILINAS GIYIDGPVIH LNQGTAAAPA AAGTGATATA ATAASAVKTG LGDDVDALVA QSPSLQKDLL RLEKDDWKIK YGAPGKGSFA TRGDEQTITL DGNLKGNALA TTQTLAHEVG HATYAFKPDY SSKAAYVNGT LADEGAATMN NVKIQREILA KGGQDIGIAG NSANHAAYNK AYDQFLKDGN AEAARQAIGA QFGKGEITSN THQPYADYYG STYDKSFPPK K
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