Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3091 |
Symbol | |
ID | 1221955 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3327984 |
End bp | 3329114 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637239509 |
Product | outer membrane porin signal peptide protein |
Protein accession | NP_521212 |
Protein GI | 17547810 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.314497 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGT CTGCCATTCT GGTTGCAGTC GGCGCCCTGT TCGCAGGTTC GGCCTACGCC CAATCGAGCG TGACGCTGTA CGGCATTGTC GATGCCACCA TTCACTACAC CACCAACGCG AACCAAGCCG GCAACAGCCT GCTGCGTATG GACAACGGCG CGGTGTCCAA CAGCCGCTGG GGTCTGAAAG GCTCGGAAGA TCTGGGTGGC GGCAACAAGG CGCTGTTCGT GCTGGAAAGC GGCTTTGATC CGGACACCGG CCGCGTCAAC AGCGGCGGGT TGTTCAACCG TCAATCCTTC GTGGGCCTGT CCAACAAGGA CTACGGCACG CTGACGATGG GCCGCCAATA CAACTTCGGC TTCACGATGG GCGGCAACTT CGACCCGCTG GGCGTGGGCA ACTACGACGA AAACTCGTGG CTCTACTACG GCGTGACGGG TCTGCGCGTG TCGAACATGC TCAAGTACGA AGGCAAGTGG AACGGCCTGT ACGTTGGCCT GGGCTACGGC TTCGGCGAGC AGGCCGGCAG CACGGCAAAC AACCGCTACA TGGGCGGCGC GGTGTCGTAT GAATTCGGCC CGGCCCTGAT CGGCGCGTTC TACCAGCAAC AGCAGGATTC CACCGCCGCC GGCAACAAGC AGAAGGTGTG GGGTATCGGC GGCAACTACA CCATTGGTGC TGCCAAGCTG TTCGCGGGCT ACATCGACAG CAGCGATAAC ACGGGCTGCG TGAACAGCAG CACCTGCGCG GGCGACCGCA GCACCTTTGG CCTGAACCTG TATAACAACG CATCGGGTCC TGGTCTGACC CCGGGCGCCA CCAAGCGTCG CGACCACATC GGTCTGGCTG GCCTGACCTA CCAGGTCACG CCGGCGCTGG CGCTGACGGG TGCGTTCTAC TACGACAGCA TCAGCAACGC TGCGCTGGAC GCCGGCAACG ACGGCAAGCG CTACACCGGT GTCCTGCTTG CCGAGTACTC GCTGTCCAAG CGTACCCAGG TGTACGGCAC CGTGGCCTAC GACAAGGTCA AGAACGCTGC CATTCCGGAA CAACCGGGCG GCACGGGCAC GGGCATCAAC GCCAAGACCA ACCAAATCGG CGTGGGCGCA GGCATCCGTC ACATCTTCTG A
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Protein sequence | MKKSAILVAV GALFAGSAYA QSSVTLYGIV DATIHYTTNA NQAGNSLLRM DNGAVSNSRW GLKGSEDLGG GNKALFVLES GFDPDTGRVN SGGLFNRQSF VGLSNKDYGT LTMGRQYNFG FTMGGNFDPL GVGNYDENSW LYYGVTGLRV SNMLKYEGKW NGLYVGLGYG FGEQAGSTAN NRYMGGAVSY EFGPALIGAF YQQQQDSTAA GNKQKVWGIG GNYTIGAAKL FAGYIDSSDN TGCVNSSTCA GDRSTFGLNL YNNASGPGLT PGATKRRDHI GLAGLTYQVT PALALTGAFY YDSISNAALD AGNDGKRYTG VLLAEYSLSK RTQVYGTVAY DKVKNAAIPE QPGGTGTGIN AKTNQIGVGA GIRHIF
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