Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2777 |
Symbol | aroE |
ID | 1221624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2987691 |
End bp | 2988611 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637239178 |
Product | shikimate 5-dehydrogenase |
Protein accession | NP_520898 |
Protein GI | 17547496 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.371956 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATATCGT TTGAACAGGC GGCCATTCTC GCGGCCGCCA GCGCCCCGCC AGTCGATCGC TACGGTGTGA TCGGCAATCC GATCTCGCAC AGCAAGTCGC CGGCCATCCA TGCCGCCTTT GCGCAGCAGA CCGGCCAGCT GATGCGCTAT GAGCGCATCT ATGCCGAGCT GATTGCCTTT GACGAGACCG TGTTCTCGTT CATCCGTGAG GGCGGGCGGG GGCTCAATGT GACGGTGCCG TTCAAGCTCG ATGCGTACGC ACTGGCGACC TCGCTGTCGC TGCGTGCGGA GTCGGCCGGC GCCGTCAACA CCCTCAAGTT CGACGGCGAT GCGATTTTCG GCGACAACAC CGATGGCGTC GGCCTGATGC GCGATATCAC GCACAACATC GGCAACCCGC TGGCGGGTGA GCGCGTGCTG CTGCTCGGCG CGGGCGGCGC GGCGCGCGGC ATCCTGCTGC CGCTGCTGGA GCACAAGCCG TCGCGCGTGT TCATCGCCAA TCGCACAGCC GATCGCGCCA TCGGGCTGGT GCAGCGCTTC GAGGCAGCGG CCAAGCTGCA CGAGGTCGAG CTGGTGGGCG GCGGCTTCGA CGACCTGGCC GTCAGCGACG TCTTCGATGT CGTCATCAAC GCGACCGCGG GCAGCCTGCA GGCCCAGGTG CCGCCCATCG AGCCGACCGT GTTCGGCCCC AACGCGCTGG CCTACGACAT GATGTACGGC TCGCAGCCGA CGGTGTTCAT GCAGTTCGCC AAGCGGCATG GTGCCCGCGC GTGGGACGGC CTGGGCATGC TGGTGGAGCA GGCGGCGGAA TCGTTCCTGG TCTGGCGCGG CATGCGCCCC GACACCGCCC CCGTGCTACA AGCCATGCGC GAGGGGCTGC AGGGCGAGGC GGCCGTGGCC GCGCGCGCGC ATCAGCGCTG A
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Protein sequence | MISFEQAAIL AAASAPPVDR YGVIGNPISH SKSPAIHAAF AQQTGQLMRY ERIYAELIAF DETVFSFIRE GGRGLNVTVP FKLDAYALAT SLSLRAESAG AVNTLKFDGD AIFGDNTDGV GLMRDITHNI GNPLAGERVL LLGAGGAARG ILLPLLEHKP SRVFIANRTA DRAIGLVQRF EAAAKLHEVE LVGGGFDDLA VSDVFDVVIN ATAGSLQAQV PPIEPTVFGP NALAYDMMYG SQPTVFMQFA KRHGARAWDG LGMLVEQAAE SFLVWRGMRP DTAPVLQAMR EGLQGEAAVA ARAHQR
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