| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2383 |
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| Symbol | |
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| ID | 1221229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2587974 |
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| End bp | 2591873 |
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| Gene Length | 3900 bp |
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| Protein Length | 1299 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637238783 |
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| Product | putative signal peptide protein |
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| Protein accession | NP_520504 |
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| Protein GI | 17547102 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2911] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00682258 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGACGCGC ACACACCCGA ACCCACCCGG CCGGACGCAC CGATTCCGCC CGGGCGCGGC
TGGGGTCGCC GGCTTCTGCG CTGGGCGGGC CTGCTGGTCG CCTTCGTGTT GCTGGCCGTG
GCGGCGCTGT GCGGCTGGCT GGTGTGGGCG CTGCAATCGC CCACGGGGAC GGCCCAGCTG
TGGTCGCTGG CCACCCGCTT CGGCCACGCC CATGTGTCCG GCAGGCTGGC CGGCGGCACG
CTGCGCGACG GGCTGTCGCT GCGCGATCTG CATGTGCGGG CCGGCGGCAC GGAAGTCCGC
ATCGACCATG TGGAGGGCCG CTGGGCGATC ACGCGCGGGC CCTGGCATGC CCGCTTCGCC
TACCTGAGCG CGGGCAACGT CGACGTGACC TTGCATCCGA CCGCGCCCAC CCCGCCGAGC
GGCCTTCCGG CGTCGCTGAC CTTGCCGCTG GCGCTGGACG TGGACCGCCT GGCGGTGGAC
CGCCTCGCCA TCCGCCAGGG CACGTCGACG ACCGAGCTGA AAGCGCTGGC CGGCAGCCTG
CACACCGATG GGTCGCACCA CAACGTGCTG CTCGACAGTG TCGACACGCC GGCCGGCCGG
CTGGCCGCCA CGCTGCGCAT GGCGGGCACG CGGCCGTATC CGCTGACCGG CGCGGCCACG
CTCGCCGCGC AGTTCGAGGC GGGCGGGCAG CGGCGGGAGG CGTCGGTGTC GGCGCAGCTG
TCGGGCTCGC TGGAGGCGCT GCGGATCGAC GCGATCGGCA CCGGCGCCGG CCTGACCGCG
CAGGCGCGGA TCGACGCCAC GCCGTTCGGC GCGCTGCCGT TCACGCGGGC GGTGGTGTCG
GCCGAGCAGG TCAACCCGCG CGCGTTCGCG CCCGGGGCGC CGGAGGCCGC GCTGTCGGTC
CACGCCGATC TGCGGCCCGA TGCGCAGGCC ACGACGCTGA CGGTGGCCGG CCCGGTGCGG
ATCGACAACG CGCAGGCCGG CCCGCTCGAC TGGCAGCGGC TGCCGCTGCA GTCGCTGCGG
GCGCAGGTGC GGCTGACCGA GGCGGCGCAG CAGCTGACCG GTCTCGACGT GCGCCTGCCG
GGCGGCGCCC AGGTGACCGG CAGCGCCGAC GTGCGGAACG GCCGCGGTAC GCTGCGTGCC
GAAGTGCGGC AGCTCGATCT GCAGGCGTTG CACGGCGCGC TGGAGAAGAC GCGGCTGGCC
GGCCCCGTCA CGGTCGATTT CGAGGGCGGC ACGCAGCACG TGAGGCTCGA CCTGGCCGGC
GGCGACATGC GCGCACAGGC CACGGCCGTG CTCGATGCCG CGCAGATCGC GGTGGACAGC
GCGCAGCTCT CGCTCGGCCG CTCGCGCCTC TCGCTGTCCG GCACGCTCAA GCACGACGAG
GCCCAGTCCT TCGCCTTCAA GGGCAACCTG GCCGAGTTCG ATCCGTCGCG GCTGGCCAAG
GTGGCCAGGG GCCGCATCAA TGCGACGTTC GACACGCACG GCACGCTGGC CGAGCCGATC
GACGCGGCCA TCCGCTTCGC CGTGCGCGAC AGCGAATACG CCGGCCTGCC GATGACCGGC
GACGGCAATC TCCACCTGCG CGGCCCGCGC CTGCTGCCCA GCGATGCGCG GCTCGACGTG
GCCGGCAACC GGGCGAGCCT GCGCGGCAGC TTCGGCGCGG CGGGCGACCG CATGCACGTC
GATATCGACG CACCGCAGCT GGCGCGCCTG CGGCTGGGTG TCGGCGGTGC GCTGTCGCTG
TCGGGCGATG TTTCCGGCAC GCTCAAGCGC CCGCAGGTGG AGGCGACCTT CCGCGCTCAG
CAGCTTGCCT ACGGCGGCAA CCGGATCGAT GCCGCCAGCG GCCGCGCGCA GCTGCGCGAT
GGCCTCGACG GACCGCTGCA GTTCGAGCTG ACCGCGCAGC GCGTGAGCGC GCCGAATGTG
TTGCTGCGCG AGGTGCGCGC CACGCTCGAT GGCACGCGCC GCGCCCACCG GTTCCGCGCC
GACGCCGACG GCAGCGTGCG CAGCCAGCCC TTCACGTTCG CGCTGGCCGG CGACGGCGCG
CTGACGCCGG GCAAGGATGG CGATGCATGG GCCGGCACGC TGTCCACGCT GTCGGCGCGG
GGCGCGCCCG ATCTGCAATT GACGGCGCCC GTGCGCGTCT CGGTGGCGCC GGGGCGCCTG
GCCGTCGGGC GTGCGGACCT GACCCTGGAC CAGACGCCGA TCCGCATCGA GCGCGTCGAA
TCGGACCAGG GCCACCTGCG CAGCGCCGGC CGCGTCGACG GCCTCGCCAT CGCGCGCGTA
CTGGAGCTGG TGCGCATCTG GACCGGCCAG GCGCCGCCGG TGCGCACCGA CCTCGTCATC
GACGGGCAGT GGGATCTCGA TCTGGGCGGG ACCGCTACCG GCACCGCGCG CATCGCCCGC
CGCAGCGGCG ATCTCAGCAT CAACGCCGGG CGCGGCTTCA CGCCGCTCGG GCTGACCGAG
GCGGTGGTGG AGGCGCGCGG CGAGGGCATG CGGCTGGGCT TGCACGGCGA CGTGCAGTCC
ACCCGCGTCG GCCGCATCCA CCTCGATGCC GGCATCGGCC TGGCGCGCGA GGCGGTGCCG
GGGGCCCTGG CGCTGATGTC GCCGGCTTCG CCGCTGTCGG GCACGCTGAC GGTGGACTTG
CCGCGGCTCA AGGCGGTCGG CGACCTGCTC GGCCCCGACG TCGCGCTGGA CGGCCGGCTG
GCCGCCAACC TGACCTTTGC CGGCACGGTG GGCGCGCCCA AGGTGAGCGG CCTGCTGGAC
GGGCAGGGCA TCGACGTGGC GCTGTACGAC CAGGGCATCC GCCTGACCGA TGGCACCGTG
CACGTGGGGC TGGACCAGAA CGTGGTCGAC CTGAAGGAGG TGGTGTTCCA CGGTGGCGAC
GGCACGCTGC GCGCCCAGGG CCGCGTGCAG CTGGGCGAGG CCAATCCCAA CCTGGCCGGC
ACCCTGGTGG CCGACCGGCT GCAGCTGTTC GCCGACCCGG ACCGCACGCT AGTGCTGTCG
GGCCAGGCGC GCATCGCCAA CGAAAGCGAT CGCGTGGCGA TCACCGGCAA GTTCCGCATC
GACCGCGGCC TGTTCAATCT GCCCAAGGAC GGCGCCCCGA GCCTCGGCGA CGACGTGGTC
ATCGTGCGCC GCGCCGATGC GGCCCGCAAC CGGGCCGAGC GCGGTACCTC GCGCGAGGAG
AAGCCTGCCG GCCGCTTCAG CCCGGTGGTG GACGTGGATG TCGATTTCGG CGACCACTTC
CGCTTCAAGG GCGCCGGCGC CGACCTTGCG CTGGGCGGCC AGATGCACGT GCACAGCGAG
CCGCTGGTGC CGCTGCGCGG GACCGGTTCG ATCTACGTGC GCCAGGGCAG CACATACGAA
GCGTTCGGCC GCAAGCTGGC CATCGAGCAG GGCATCCTGA ACTTCACCGG GCCGATCAAC
AATCCGTCGC TCAACATCCT GGCGATGCGG CGCAACCAGG AGGTCGAGGC CGGGGTGCAG
GTGACCGGTA CGGTGCGGCA GCCGCGCGTG AAACTGGTCT CCGAGCCCAG CGTGGCGGAC
GAGGACAAGC TGTCGTGGCT GATGTTCGGC TACAGCGCTT CTAACGCCGG GCTGGGCCAG
CAGCAGGCCA TGTCCGGCGC GGCGCTGGGG CTGCTGGGCA ACGTGGCGGG CAAGAACGTG
GCGCGGCGCT TCGGGCTGGA TGAGTTTTCG ATCGGTCCCA GCACGTCGGG CCTGACCGAT
CCGCAGGTGG TCAGCGTCGG CAAGGCGATC TCCGAGCGCA TCGCGGTCGG CTACGAGCAG
AGCCTGTCGA CCGCCGATTC CATCGTCAAG CTCACCTGGC AGCTGTCGCG GCGCTGGTCG
GTGGTGGCGC GCGGGGGTAC GATCAACGGC GCGTCGATCC TGTTCAACAA GCGGTTTTGA
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| Protein sequence | MDAHTPEPTR PDAPIPPGRG WGRRLLRWAG LLVAFVLLAV AALCGWLVWA LQSPTGTAQL
WSLATRFGHA HVSGRLAGGT LRDGLSLRDL HVRAGGTEVR IDHVEGRWAI TRGPWHARFA
YLSAGNVDVT LHPTAPTPPS GLPASLTLPL ALDVDRLAVD RLAIRQGTST TELKALAGSL
HTDGSHHNVL LDSVDTPAGR LAATLRMAGT RPYPLTGAAT LAAQFEAGGQ RREASVSAQL
SGSLEALRID AIGTGAGLTA QARIDATPFG ALPFTRAVVS AEQVNPRAFA PGAPEAALSV
HADLRPDAQA TTLTVAGPVR IDNAQAGPLD WQRLPLQSLR AQVRLTEAAQ QLTGLDVRLP
GGAQVTGSAD VRNGRGTLRA EVRQLDLQAL HGALEKTRLA GPVTVDFEGG TQHVRLDLAG
GDMRAQATAV LDAAQIAVDS AQLSLGRSRL SLSGTLKHDE AQSFAFKGNL AEFDPSRLAK
VARGRINATF DTHGTLAEPI DAAIRFAVRD SEYAGLPMTG DGNLHLRGPR LLPSDARLDV
AGNRASLRGS FGAAGDRMHV DIDAPQLARL RLGVGGALSL SGDVSGTLKR PQVEATFRAQ
QLAYGGNRID AASGRAQLRD GLDGPLQFEL TAQRVSAPNV LLREVRATLD GTRRAHRFRA
DADGSVRSQP FTFALAGDGA LTPGKDGDAW AGTLSTLSAR GAPDLQLTAP VRVSVAPGRL
AVGRADLTLD QTPIRIERVE SDQGHLRSAG RVDGLAIARV LELVRIWTGQ APPVRTDLVI
DGQWDLDLGG TATGTARIAR RSGDLSINAG RGFTPLGLTE AVVEARGEGM RLGLHGDVQS
TRVGRIHLDA GIGLAREAVP GALALMSPAS PLSGTLTVDL PRLKAVGDLL GPDVALDGRL
AANLTFAGTV GAPKVSGLLD GQGIDVALYD QGIRLTDGTV HVGLDQNVVD LKEVVFHGGD
GTLRAQGRVQ LGEANPNLAG TLVADRLQLF ADPDRTLVLS GQARIANESD RVAITGKFRI
DRGLFNLPKD GAPSLGDDVV IVRRADAARN RAERGTSREE KPAGRFSPVV DVDVDFGDHF
RFKGAGADLA LGGQMHVHSE PLVPLRGTGS IYVRQGSTYE AFGRKLAIEQ GILNFTGPIN
NPSLNILAMR RNQEVEAGVQ VTGTVRQPRV KLVSEPSVAD EDKLSWLMFG YSASNAGLGQ
QQAMSGAALG LLGNVAGKNV ARRFGLDEFS IGPSTSGLTD PQVVSVGKAI SERIAVGYEQ
SLSTADSIVK LTWQLSRRWS VVARGGTING ASILFNKRF
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