Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2308 |
Symbol | |
ID | 1221153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2507850 |
End bp | 2509553 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637238707 |
Product | putative GSPE-related protein |
Protein accession | NP_520429 |
Protein GI | 17547027 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.173672 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACACGA ACTGCGCAAC CCCCGACTCG CGCGGCACCC TGTACCGCGA TGCCTTGCGC GAACTCGGCG AGCGCTACGG CTCGGGCATC CGGGCGCTGG AGGCACTGCC GGCGCATGTC GATGCCGACG CCGATACGGT GCTGGCGCTG CTTGCGCAGG CGTTCCGGAT GACGCCCATC GGCATCCGCG AGATGCATGG GCTCGAGCCG GATTTCAGCG TGATGCCGTT CGTCGAGGCC ACCGCGCGGC TGTGCATGGG CTTCCGCGAC GGGGCGGGCC TGCTGTTCGT GATCGCCGAT CCGCTCGACG CCCGCATCCG CGGCTGCATC GACCAGCGCA TGCGCGCGCG CCCCACCGTG CCGTACCGGT GGTCGCTCGC GAGCGTCGGC GATCTGAATG CCTATCTTGC CGCCCGCGAA AAGGATGTGC GGGCGATGGA CACGCTCGCG ATGGACGGCG CCGTGCGGGG CGCCAGCGAG ACGGCCGCGC TGGCCCTGAC GCTGCAAGGC ATCAGCCATG ACGACAGCCC GATCGTCCGG CTGCTCAATT CCACCATCTA CGACGCGCTG AAACTGCAGG CGAGCGACAT TCACCTGGAG TGCCGTGCCG GCGGGCTGAC CATCAAGTAC CGGATCGATG GCGTCCTGAA TGTCGTCAGC CGGATGGAGG GGCGTGAGCT TGCCGACCAG GTGCTGTCCC GGCTGAAGGT GATTTCCGAG CTCGACATCG CCGAGCGGCG GGTGCCGCAG GACGGGCGCT TCAAGGCGCA ATACGCGGCG CGCGACATCG ACTTTCGGGT GTCGATCATG CCCAACCAGT TCGGCGAGGA TGCGGTCTTG CGGATCCTGG ACCGGTACCA GCTCTCGCAG GCCGCCGGCG GGCTCACGCT CGAAGCGCTC GGGTTCCAGG CGGGCGACAT GTCGTTCATG CGCACGGTCG CGGCCATGCC CTATGGGATG CTGCTGGTGA CCGGCCCGAC TGGCAGCGGC AAGACGACCA CGCTGTACGC CATTCTCACC GAGATCAACG ACGGCCTCGA GAAGATCGTC ACGATCGAGG ATCCGGTCGA GTACCAGCTG GGCGACATCC TGCAGATTCC CGTCAACGAA GCGAAGGGGC TGACGTTCGC GCGCGGCCTG CGGTCGATCC TGCGGCACGA TCCCGACAAG ATCATGGTCG GCGAGATCCG CGACAGCGAG ACCGCGCAGA TCGCGGTGCA GGCCGCGCTG ACCGGCCACC AGGTCTTCAC GACCGTGCAC GCGAACAATG TGTTCGACGT GATCGGGCGT TTCACCAACA TGGGGGTCGA TTCGTACAGC TTTGTTTCGG CGCTGAACGG CGTGATCGCG CAGCGCCTGC TGCGCCGTTG CTGCCCGGAT TGCGCGACGC AGGAGCGGTA TGCGCCGGAG CTGCTCGCGC GCGCCGGCAT CGAGCCCGAT GCGGCGCAGG ATTTCCACTT TCGGCGCGGC ATCGGCTGCG CGGCGTGCCG CGGCACCGGC TATCGCGGCC GCCGCGCCAT CGCAGAGGCG CTGCGCATGA ATGATGAACT GCGGCAACTG CTGTCCGAGC GCGCGCCGAT CGGGCAGATC AAGCAGGCGG CGATGCGCAG CGGCATGACG ACGCTGCGCA CCGCGGCGGT CAAGCTGGTT GCCGCGGGCG AAACCACGCT TGAGGAGATC AACCGTGTCA CGCTTGTCGA CTGA
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Protein sequence | MDTNCATPDS RGTLYRDALR ELGERYGSGI RALEALPAHV DADADTVLAL LAQAFRMTPI GIREMHGLEP DFSVMPFVEA TARLCMGFRD GAGLLFVIAD PLDARIRGCI DQRMRARPTV PYRWSLASVG DLNAYLAARE KDVRAMDTLA MDGAVRGASE TAALALTLQG ISHDDSPIVR LLNSTIYDAL KLQASDIHLE CRAGGLTIKY RIDGVLNVVS RMEGRELADQ VLSRLKVISE LDIAERRVPQ DGRFKAQYAA RDIDFRVSIM PNQFGEDAVL RILDRYQLSQ AAGGLTLEAL GFQAGDMSFM RTVAAMPYGM LLVTGPTGSG KTTTLYAILT EINDGLEKIV TIEDPVEYQL GDILQIPVNE AKGLTFARGL RSILRHDPDK IMVGEIRDSE TAQIAVQAAL TGHQVFTTVH ANNVFDVIGR FTNMGVDSYS FVSALNGVIA QRLLRRCCPD CATQERYAPE LLARAGIEPD AAQDFHFRRG IGCAACRGTG YRGRRAIAEA LRMNDELRQL LSERAPIGQI KQAAMRSGMT TLRTAAVKLV AAGETTLEEI NRVTLVD
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