| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1986 |
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| Symbol | |
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| ID | 1220826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2160233 |
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| End bp | 2163121 |
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| Gene Length | 2889 bp |
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| Protein Length | 962 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637238380 |
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| Product | hypothetical protein |
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| Protein accession | NP_520107 |
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| Protein GI | 17546705 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.722287 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.124787 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGGGTGA GCCAATACCG CCGGAGAGAA TCGTCCCATC GCAGTCCTCG CTGGTCGGCT
GTCGCAATTG CCGCGGCAAG CCTGCTGCTG ATCCAGCCCG CCGCGCACGC GGCCGGCTTC
GGCGCTTTGC ACGTGCGTTC CAGCCTGGGA CAGCCGCTGC AGGCCGAGAT CGATCTGAGC
GGCGTGACCG AGGAAGAGGC CCAGAATCTG GTCGCCAAGC TGGCTTCGCC TGATGCCTAC
CAGCGCGCCG GCCTGACCTA CAACCCGATC GTCTCGACGC TGCGGGCCTC GCTGGTGCGC
CAGTCCGGCG GCAGCTACGT GGTGCGGGTG ATTTCCGCCC AGCCGGTCGC CGAGCCGTTC
GTCGATATCC TGGTCGACCT GACCTGGGCA TCGGGCCGCG TCTCGCGCGC CTATACCTTC
CTGCTGGACC CCGCGGGCTC CAGCAATACG CCCCGCAATT TTGCGCCGAC GCCGGTGGTG
CAGGCCACGA CGCCGGGTGT GGTCGATTCC ACGCCGGCTC CGGTCGCGGC TGCACCGCAG
GCACCGGCGG CCGCACCGCG CGCCGCCCGT CCGGCGCGCC AGGCCGCCGT CCGCCCGCAA
GCGGATGCGG CCGCGGCGGA GCCGTCGTCC GGCGCGGGAT ACACCGTGCA GCGCGGCGAC
AGCCTCTACG ACGTCGCCTC GAATGCCGTG CAGGGCCAGG ACGGCGTGTC GCTGGACCAG
ATGCTGCTCG CGCTGTACCG AAACAATCCC AAGGCATTCA TCGGCGGCAA TATCAACCGC
CTGCGTACCG GCTCCGTGCT GACGGTTCCG TCGGCGGCCG AAGCGCAGAA GGTGTCGTCG
CGTGAGGCAC GCCGCGAGGT GGTCGCGCAG ACGTCCGGCT TTGCCGGCTA CCGCAGCCGC
CTGGCTACGG CCGCCGAAGC CAATGCCGCG ACGGATACCG ATTCCGCCAG GCAGCAGAGC
GGCAGCGTGT CCGCCCGTGT CCAGGATCAG GCTACGCCGT CCGCCAGCGA GCGCGACGAG
CTGCGCCTGT CCAAGGCGGA TCGCACCGGC AAGGCCGCTG CCACCGCCGG CGCACGTGCG
GAGGAACTGG TTGCCAAGGA GCACGCGCTC AAGGAAATGG AATCGCGGGT GGCGCAACTG
GAGAAGAACC TCTCCGAGAT GCAGCACCTG ATCGAAGTGA AGAATGCGGA GCTCGCCAAG
GCGGCGGCTG CCAAGCCCGC CGCGGGTGCT GCGCCGTCGC CGGCGACGGC CGCGCCGGCG
GTGACGGCTG CCAACGCACC GGCGCCGTCG GCTTCGGCTT CGGCAACGCC GGCACAAGCC
CCGGCTGCGG CCGCGTCCTC GGCGGAAACG GCTTCGTCGG CCACGGCAAC GGCGGGCGCG
TCGGCTCCGG CTGCTGCCAC GCCGGCAGCG GCCAGCGCAC CGGTGGCCGA GGCTTCGGCT
CCCGCCGCTG CGCCCAGGAA GGCGCCAGTG GTGGTGGCAC CGCAGCCGCC GGCCGAGGAA
GAGTCGTTCT TCTCCTCGCT GCTGGGCAAT CCGATGGCGC TGGGCCTGGG CGGCCTGGTG
GTGGCGCTGG CGGGCGGCTT GGCTGTGTAT CGCCGTCGCC AGCAGAAGCC CGAGCAGGCG
CACGGCTTTC AGGACAGCCT GCTGTCGCAG GAGAGCACGG TGATGGCCGG GGCCAACTCG
CTGTTCGGCG CGGCTGGCGG CCAGAGCATC GATACGTCGC AGCACAGCGT GTTCGGGGCC
GATTTCCGCA TCGGCGGTGG CAACGAGAGC AATGAAGTCG ATCCGATCGC GGAAGCCGAC
GTCTACATCG CCTATGGCCG CGACGTGCAG GCCGAGGAAA TCCTGCGCGA GGCGCTCGAG
CAGCATCCGG AGCGCCAGGC CATCCGCCTC AAACTGATGG AAATCTACGC CAACCGCCAG
GATGCGCACG GCTTCCAGAC CATCGCCGAG GAAATGCTGG CGCAGGTGGG GGCCGCATCG
CCCGACTGGG CCGAGGCCGC CGCGCTGGGC CGCAAGTTCG ATCCGGCCAA TCCGCTGTAC
CTGACGGTGC AGGGCGACGG CCACCACGAG CAGGTTGCCG CCGATGACCG TCACGGTCAC
GCCGGCGGTG CCGTGGCTGC TGCGGGCGCT GCCCTGGCGG GCATGGGCGC TGCCGCGGCG
GCTGCCGAGG CGTTCAAGCC GACCGTGACG GGCGAAACCA CCCGCCGCGG CGAAGAATGG
ACCACGGTGG ATCCGGGCAT GGACCCGTCC ATGCCGTCGA CCAAGGCACC GCAACTGGCG
GATCTGGAGC TGCCGCTGGA ATCCTTCCCG GCGCCGGCGG CCGGCGAGCC GATCACGGCG
CCGCTCCAGG CAGCCGAGGT GTTCCAGCCG CTTGCCGAGC CGGAAGCCCC GCCGGCGCTC
GAACTGCCGC AGACCGACTT CGCTGGTCAT GCCGGCGAAG CGTTCCAGCC GGCTTCGGTG
CCGCCGCTGC ACATGGATCT GTCCGATCTG TCGTTGGACC TGAACCCGAC GGCGCCCGTT
GCCGAGACGC CTGCCGTGGA GCCGGCGCCT GCCGCCGTGG CCGCAGACAG CCTGCCGGCC
TGGGCGCAGC CTGCCGACCT GCCGGAAACG CCGGTGCAGC TCGACGCAGC GCCGCAGCCC
CAGGAGGTCG TCGCGCAGCA AGAAGAGCCG CTGACGGTCA TGCGCCTGGA CACCAACCTC
CCGCACACGC TGTCGGCCGA GGGTGGCATC GATGGCGTGC GCGACCTGCA GATCAAGTTC
GATCTGGCCA AGGCCTACAT CGAGATCGGC GACAAGGAAG GTGCGCGCGA GCTGCTGCAG
GAAGTGCTGG ACCTGGGCGA TCCGTCGTTC CACGCCGAGG CCCAGGCGCT GATGCGCCAG
ATCGGCTGA
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| Protein sequence | MRVSQYRRRE SSHRSPRWSA VAIAAASLLL IQPAAHAAGF GALHVRSSLG QPLQAEIDLS
GVTEEEAQNL VAKLASPDAY QRAGLTYNPI VSTLRASLVR QSGGSYVVRV ISAQPVAEPF
VDILVDLTWA SGRVSRAYTF LLDPAGSSNT PRNFAPTPVV QATTPGVVDS TPAPVAAAPQ
APAAAPRAAR PARQAAVRPQ ADAAAAEPSS GAGYTVQRGD SLYDVASNAV QGQDGVSLDQ
MLLALYRNNP KAFIGGNINR LRTGSVLTVP SAAEAQKVSS REARREVVAQ TSGFAGYRSR
LATAAEANAA TDTDSARQQS GSVSARVQDQ ATPSASERDE LRLSKADRTG KAAATAGARA
EELVAKEHAL KEMESRVAQL EKNLSEMQHL IEVKNAELAK AAAAKPAAGA APSPATAAPA
VTAANAPAPS ASASATPAQA PAAAASSAET ASSATATAGA SAPAAATPAA ASAPVAEASA
PAAAPRKAPV VVAPQPPAEE ESFFSSLLGN PMALGLGGLV VALAGGLAVY RRRQQKPEQA
HGFQDSLLSQ ESTVMAGANS LFGAAGGQSI DTSQHSVFGA DFRIGGGNES NEVDPIAEAD
VYIAYGRDVQ AEEILREALE QHPERQAIRL KLMEIYANRQ DAHGFQTIAE EMLAQVGAAS
PDWAEAAALG RKFDPANPLY LTVQGDGHHE QVAADDRHGH AGGAVAAAGA ALAGMGAAAA
AAEAFKPTVT GETTRRGEEW TTVDPGMDPS MPSTKAPQLA DLELPLESFP APAAGEPITA
PLQAAEVFQP LAEPEAPPAL ELPQTDFAGH AGEAFQPASV PPLHMDLSDL SLDLNPTAPV
AETPAVEPAP AAVAADSLPA WAQPADLPET PVQLDAAPQP QEVVAQQEEP LTVMRLDTNL
PHTLSAEGGI DGVRDLQIKF DLAKAYIEIG DKEGARELLQ EVLDLGDPSF HAEAQALMRQ
IG
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