| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0958 |
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| Symbol | |
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| ID | 1219766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1004804 |
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| End bp | 1007527 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637237320 |
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| Product | putative VGR-related protein |
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| Protein accession | NP_519079 |
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| Protein GI | 17545677 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.677133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCCGC GCCCGCTTTG GCCGTGGCTG TTTTCGCTTG TCGCCAACAT TCCGAGAAGT
GAGAGCATGG CCGAATCCGA TCGAACGGCA CATCTGCACG GCATCCTCTT TTTCCAACAG
AGCAACCGCC TGTTGGGCCT GTCGTTCCCG AAGGACGACA CTCCCACGGC CACTGACCCA
CGGGGTCGCT CGTTCCCCGT GCAGATGGTG GTCGAACGCC TGGAAGCCCA GGAGGGCCTG
GGCGAAGACT TCCGTTTCGA GTTGACGCTA TTGGCCGATC ACGCCGGCCT TGTGCTGGCG
GACATGCTGG GCAAGCTGCT GGCGGTGTCC CTGGTCAAGC CGGACGGCAC CCTGCGCTGG
TTCACCGGGC ACGTGTCGGA ATTTTCATTG GTGGGCAGCG ACCCCGGTGT GGCGACCTAC
CGGGCGGTGC TCAGGCCGTG GCTGTGGTTT GCGCTACACC GGATCAACAA CCGCGTGTTT
CGAGACCGGA GCCTGTACGA GCAAATCGCG GAAATCCTGC AAGACTATGG CGCCTGGGCG
CAATGGCGCT GGGACGCGAG CGGAGCTGAT GCGCCGTTCA CCATGGCCGT GCAGGGCGGC
GGCCAGGGCG AGAGCGACCA CAACTACATC CACCGCAGGC TGGAAGCGCA GGGCTGGACC
TACCGCTACG AACACGACGC GACCGGCCAC CGGCTGGTCA TCTTCGACAG CAACAGCCAG
TGTCCGCGCG TGGCGGGCGA CCATCGGATA CCCTTTCAGG CTGCGGGCGG CCCCCAGGAG
GAAAACGCCA TTCAGCGCTG GACGCCGGTG CAGACCGCTG CGGCCGCGCT ATTCGCGGCG
AGCGCGTTCG ACTTCAAGCA GTCGCAGGCA CGGCACCAAG CAGAATCGAC GCTGCGCAAG
CAGGGCCGTG TTCCGGAGCT GGAGGCGCAC GAATACGTGG GGCACTACGG CTTCACGAAG
GAAGACCCCA CGGGCGCTGC GCTGCTGAAC TTGCGCAGAG AGGAAGTCGA AGCGCACGCC
GAACAATATC AAGCGGAAGG CAACAACAGC AGCGTGGCGG CCGGCTGCTG GTTCGAATTG
TCGGAGCACT TCAGCAACAC CGAGCGCGAG GAGGACAGCC AATACCTGAT CGTGGCGGCC
AGCCACAGCG CGAGCAACAA CTACCTTGCG GAACTCGGGC GACAGGGGGG CCGTGAGGCG
CAGCCGCTTG CCGGCCGCAA GGGCGAATAC CGTAACCGCT TCACCGCGAT CAAGCGCGCG
GTGCCGTGGC GTCCGGGGCG GGGCAGGAAC AGCGTCGATG TGAGGGTGTA CGGGCAGCAA
ACCGCGACAG TGCTTGCCGC TGGCGGGCTG GGTGCGCTGG ACGTTGATGA GCACGGCCGC
ATCCTGATTC GGTTCCATTG GGACCGGGAA GGAAAGTTCA GTGCGCGTGT GCGGGTAGCG
AGCAATTGGG CGGGCGGCGA AACCGGCATG GTGTCGTGGC CGCGCGCGGG TAGCGAGGTG
CTGGTCGTTG CCCTGGACGG CAACCCCGAC CACTTCCTCG TCATCGGCGT TGTCCACAAC
GCTCGCCGCA TGCCGCCGTG GCAATTGCCC GCGCAGGGAG CGCTGATGGG TATCCGCAGC
CGGGAACTGA CCCCGGACGG CGGCAACGAT CCCGGAGGCC GCAGCAATCA GCTCGTTCTG
GACGACACGG CGGGCAAGAT TCAAGCGCAA CTCAAGAGCG ATCACCTGCA TAGCGCGCTG
AGCCTGGGGC ACATCACGCG GATCGATGGC ACGACCGGCC GGCAGAACCC ACGCGGCCAG
GGCTTCGCGC TGGACACCGA TGGGCACGGT GCGAGCCGTG CCGCTGGCGG GATGCAAGTC
ACTACGGAAG CCCTGTCCGG TGGACAGGGC AACATGATGG ACGTGGGTGC GCCGGTAGCG
CGGTTGACGG TGGCGCACAA CATGCACGAG CGCTTGTCGG AAGCGGCGTG TACCGCGGGG
GCACAACAGG CCGACGACCA AGGCGAGGTT GCCAAGCAAT TGCACCAGCA GAATACCGAC
CTAAAGGGCA ACGGCGGCGA TCCGGCGCAA GGGCGGTTTC CCGAGTTCCA GCAACCGCAC
TTGATGCTGG CCAGCCCGGC CGGAATCGAG AGCAGCACGG CGGGCAGTAC GCACCAGCAG
AGCAACGCGC ATCACGCGAT CACCAGCGGC GGGCACGCCA GCATTGCCAG CGGGCGCAGC
TTCCTCGCCA GTGCGAAGGA TGCGATCCGG CTGTTTGCCT ACCGGCTCGG CTTGAAGCTG
GTGGCCGCGA GCGGCGACAT CGACATGCAA GCGCTCAAGA ACGGCATCAA CATCCTGGCG
AAGCTGGAGA TCAAGATGGA GGGCAAGCGG GTGGACATCA CCGGACTGGA CGGGGTACGT
ATCAACGGGG GCGGAAGCTA TATCGACGTC AGCCAGGCGG GGATTACGAG CGGCACCAAC
GGCCAGTTCC AGGTGCATTC GGCTGACTAT TCGTTCTCGG GGCCGGATAG CCGGCCAGTG
GTGTCGCATG CGGTGACGTC GGCGTTGAAG CCTGATGAGC CCTTGCGCGT GGTTGATGCG
TTGGGCAACA GAGTTCCGGA TAGCCATGTC ATCGTGCGGC CCGGTCAGGA CGAAACGCGC
ACGGTTATTG AGGGCGGGAA GGTTGCTCCC GACGCATCGC TCGACCACCA CATCATTCGG
CGCTGGCGCC CTCGGCGAGG TTAA
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| Protein sequence | MQPRPLWPWL FSLVANIPRS ESMAESDRTA HLHGILFFQQ SNRLLGLSFP KDDTPTATDP
RGRSFPVQMV VERLEAQEGL GEDFRFELTL LADHAGLVLA DMLGKLLAVS LVKPDGTLRW
FTGHVSEFSL VGSDPGVATY RAVLRPWLWF ALHRINNRVF RDRSLYEQIA EILQDYGAWA
QWRWDASGAD APFTMAVQGG GQGESDHNYI HRRLEAQGWT YRYEHDATGH RLVIFDSNSQ
CPRVAGDHRI PFQAAGGPQE ENAIQRWTPV QTAAAALFAA SAFDFKQSQA RHQAESTLRK
QGRVPELEAH EYVGHYGFTK EDPTGAALLN LRREEVEAHA EQYQAEGNNS SVAAGCWFEL
SEHFSNTERE EDSQYLIVAA SHSASNNYLA ELGRQGGREA QPLAGRKGEY RNRFTAIKRA
VPWRPGRGRN SVDVRVYGQQ TATVLAAGGL GALDVDEHGR ILIRFHWDRE GKFSARVRVA
SNWAGGETGM VSWPRAGSEV LVVALDGNPD HFLVIGVVHN ARRMPPWQLP AQGALMGIRS
RELTPDGGND PGGRSNQLVL DDTAGKIQAQ LKSDHLHSAL SLGHITRIDG TTGRQNPRGQ
GFALDTDGHG ASRAAGGMQV TTEALSGGQG NMMDVGAPVA RLTVAHNMHE RLSEAACTAG
AQQADDQGEV AKQLHQQNTD LKGNGGDPAQ GRFPEFQQPH LMLASPAGIE SSTAGSTHQQ
SNAHHAITSG GHASIASGRS FLASAKDAIR LFAYRLGLKL VAASGDIDMQ ALKNGINILA
KLEIKMEGKR VDITGLDGVR INGGGSYIDV SQAGITSGTN GQFQVHSADY SFSGPDSRPV
VSHAVTSALK PDEPLRVVDA LGNRVPDSHV IVRPGQDETR TVIEGGKVAP DASLDHHIIR
RWRPRRG
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