Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0858 |
Symbol | |
ID | 1219666 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 895137 |
End bp | 896387 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637237220 |
Product | bacteriophage-like protein |
Protein accession | NP_518979 |
Protein GI | 17545577 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0571682 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCTGT TGCCTCATCT GGCGACACGC CTCTTTGGCG TGCCGCTGGC GATTGATCGC CCCAAACTTG ACGTGATCCT GTCGGTGCTC GGCCCGCGCG TGGGCCTGGC CGGCCTGGCG CCACCGGGCG ACTACACGCC GCCCGAACGG AATCCGGTCC GTGGCCATGC CCAGATCGCC GTGATCCCGA TCCACGGCAC GCTGGTGCGG CGTACCGTGG GCCTGGAGGC CGAGTCAGGG CTGGCCAGCT ACACCGCGAT CGGTGAACAG CTGGACGCGG CCCTGGCCGA CCCCGGCATC GCCGCCATCC TGCTCGACGT CGACAGCCCA GGCGGCGAGT CCGGTGGGGT GTTTGATCTC GCTGACCGCA TTCGCGTCGC CGCCGCCATC AAGCCCGTCT GGGCGGCGGC CAACGACATG GCGTTCTCGG CCGCCTATGC GCTGGCCTGC GCCGCGTCGC GGGTCTTTGT CTCGCGCACC GGCGGGGTTG GCTCGATTGG TGTCATCGCC ATGCACGTCG ACCAGTCCGT CAAGGACGCA AAGGACGGCG TTCGCTACAC GGCGGTGTTT GCCGGCGCCC GCAAGAACGA CCTCAACCCA CACGAGCCGA TCACCGACGA AGCGCAGGCG CAGCTGCAAG CCGAGGTGAG CCGCATCTAC AGGCTGTTCG TCGCGACCGT GGGCAGCTAT CGCGGACTGT CGGCCGAGGC AGTGACGGCC ACCGAGGCTG GGCTTTTCTT CGGGCAGGAC GCTGTCGCTG CCGGGCTGGC GGATGCCGTC GGCACGTTCG ACGACGCGCT CGCCCAGCTC ACCGCATCCC TTTCTGTTCC CGCGCCGGTC GCATCCGCGC GCACTCCCTC TCTCAACCTC CAGATGGACT GTTCCATGAA CACTCAACCT GATCCCGCTG CTGTCAGCGT GCCGGCTGCG GACGCGATCG GCACCACCGC CCAACCACCG GTTGTTGCTT CGCCGCCGGC AGCCTCCGTC GCCAGCCATA CCGACGCCGT GGAGATCGCG CAGCTGTGCA CGCTGGCCGG TCGCACCGAC CTGATCGCAG GCTTCCTCGA AGCGCGCGCC ACGCCCGAAC GCGTGCGCAG CCAACTGCTG GCCGCGCGTG CCGAGGCGTC GCCCGAGATC GCCAGCCGTA TCGATCCGCA CGCGCAGGCG GTCTCTGCCG ATGCCAGCCA CCCGGCCTCT CCCCGTAACC CGTTGCTCCA GGCCGTCAAG AAGCGCCTGG GCATCCAGTA A
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Protein sequence | MTLLPHLATR LFGVPLAIDR PKLDVILSVL GPRVGLAGLA PPGDYTPPER NPVRGHAQIA VIPIHGTLVR RTVGLEAESG LASYTAIGEQ LDAALADPGI AAILLDVDSP GGESGGVFDL ADRIRVAAAI KPVWAAANDM AFSAAYALAC AASRVFVSRT GGVGSIGVIA MHVDQSVKDA KDGVRYTAVF AGARKNDLNP HEPITDEAQA QLQAEVSRIY RLFVATVGSY RGLSAEAVTA TEAGLFFGQD AVAAGLADAV GTFDDALAQL TASLSVPAPV ASARTPSLNL QMDCSMNTQP DPAAVSVPAA DAIGTTAQPP VVASPPAASV ASHTDAVEIA QLCTLAGRTD LIAGFLEARA TPERVRSQLL AARAEASPEI ASRIDPHAQA VSADASHPAS PRNPLLQAVK KRLGIQ
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