Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0049 |
Symbol | |
ID | 1218851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 53181 |
End bp | 54437 |
Gene Length | 1257 bp |
Protein Length | 418 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637236405 |
Product | putative hemaggltinin-related protein |
Protein accession | NP_518170 |
Protein GI | 17544768 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2706] 3-carboxymuconate cyclase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCGTT TCAACCGCTT TCGCAGAACC CTCATGCAGT GGACCGGTAG CCTGCCCTTG CTGGGCGCAT TGCCTCTTTC CAAGCTTGCC CAGGCGCAGG GCGCCGAGCA GCCCGCCGCC TCTGGCACGC CGCCGGCCGG CGGCACGCGA GCGCCGCGCT TCGCCTATGT CGGCACCTAT ACGTTCGACG CGCCGGGCGG CACGGCGGGC GGGCCACCCG CGCGCGGCAT CTACGTGCTG GCGCCGCGCG GCGATGCCTG GTCGCAGGCG CAGGTGGTGG AGAGCGCCAA CCCGTCGTTC CTGGCGGTGC ACCCGAATCA GCGCTGCCTG TACGCCATCA ACGAGATCGA TGTCTACGAA GGCCGCGCCA CCGGCACCGC CGAGGCCTAT GCCATCGACC CGCGCGACGG CCGGCTGACG CTGCTGAACC GGCAGCCGCT GTCGCTGTCG GGCACGATTC CCGCGCACGT GGCGGTGTCG CCGGACGGGC AGCACCTGGC CGTGGCACTG TACGGCGGCG GCGCGTACAA CGTGCTGCCG ATCGGCGCGG ACGGCAGGCT GGGCAGCGTC TCGGGCCTGT TCAAGGACAC CGGCTCCGGG CCCGACACCG CGCGCCAGGA GGCGCCGCAC GCCCACATGG TGCTGTTCGA CCCGACCGGC CGGCACATCC TGGGCACGGA TCTCGGCACC GACCGCATCA ACGTGTTCGC GCTGGAAGAC GGCAAGCTGA CGCCGCGCGA CCGCGCCCAG CTCAAGCCCG GCGGCGGCCC GCGCCACCTG GCGCTGCATC CGTCCGGCAA GCTGCTCTAC GTCATCAGCG AACTGGACAG CACCGTGGCC TGCCACGGCT ACGACCCCGC CACGGGGCGC GTGCTGGACG AGCGCCAGCG CATCGCCACC ACGCCGGCCG ACTACACCGG GCAGAAGAGC GGCGCGGCGC TGGTGATGCA CCCGTCGGGG CGCTTCCTGT ATGCCTCCAA CCGGCGGCTG AAATCGGAGC ACCCGCTGGC CGACAGCATC GCCGCGTTCA GCATCGACCC GGCCTCCGGC AGGCTCGCCG CCCTCCAGTA CTGGAGCGAG GGCCTGCGCT TCCCGCGCGC GCTGACCATG GCGGACGACG GCCGCCACCT CTACGCGCTG AGCCAGAAGG GCGACACGAT CCTGCGCCTG CGCATCGACG ACGCCACCGG CAGGCTGGAT CAGCCGGCCG TGGTCTCCAA CGTGCCGACG CCGGTGTGCC TGGTGTTCGC CGGCTAG
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Protein sequence | MTRFNRFRRT LMQWTGSLPL LGALPLSKLA QAQGAEQPAA SGTPPAGGTR APRFAYVGTY TFDAPGGTAG GPPARGIYVL APRGDAWSQA QVVESANPSF LAVHPNQRCL YAINEIDVYE GRATGTAEAY AIDPRDGRLT LLNRQPLSLS GTIPAHVAVS PDGQHLAVAL YGGGAYNVLP IGADGRLGSV SGLFKDTGSG PDTARQEAPH AHMVLFDPTG RHILGTDLGT DRINVFALED GKLTPRDRAQ LKPGGGPRHL ALHPSGKLLY VISELDSTVA CHGYDPATGR VLDERQRIAT TPADYTGQKS GAALVMHPSG RFLYASNRRL KSEHPLADSI AAFSIDPASG RLAALQYWSE GLRFPRALTM ADDGRHLYAL SQKGDTILRL RIDDATGRLD QPAVVSNVPT PVCLVFAG
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