| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_4226 |
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| Symbol | traC |
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| ID | 3712001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides 2.4.1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007490 |
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| Strand | + |
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| Start bp | 70870 |
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| End bp | 73353 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640069544 |
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| Product | hypothetical protein |
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| Protein accession | YP_345411 |
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| Protein GI | 77404839 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family
[TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCGT TCAAGGCACT GTTTCAGGGG CTCTTTGACG ATCCCGACTG GTCCGAGGAC
GAACCGCAGG CGCTGGCCAC GGACATTGTG GCGGACCTGC TGCCCTACCG TCTCTTCGAT
CCCGAGAGCG AGCTCTTCTT CAACCAAAAC TCCACGGGCT TCCTGATCGA GGTGAACCCG
GTCGTGGGCG CCGACGATGT GGCCTCGAAC CTGCAGGCCG TCATCAACTC GAACGCGCCG
AACGGCGCTA CGATCCAGTT CCTCAACTGG ACCTCGCCCG ACATTGACGG GCAACTTGTC
CGGTGGGCCC GGCATCGTCT TCGCGGCGAT GAGCTGGTGA TGGAAATGGC GCAGCGCCGC
ATGGCGCATC TGCGGGGCGC CCGCTTCGGC ACCGATCACG TCATCAAGGC CCTGCCTCAC
CATCGGCGGG TCTTCGTGGC CTGCTGGCTC GACGGCGACG CCGATCTCAG CCAGCAAAAG
GAGCTGAAAA ACTTCCGCCG CTCGCTCTAT TCGGTGTTCG GCGGCGAAGC CTATGTCCGT
CACCTGGGGC CGGACGACTT CCTGAAGTTC CTCGGCGAGG TTCTGCACTG CCGCGGCCTC
GTCGGGATCT CCGATCTGAC CTACACGGCG GAGGAGGCGC TGAACCACCA GCTGCCGGGC
GCGGGCCTCA CGGTCCAGCG GACGGCCATC GGCCTCATGG GCGAGCCGCC CATGGCGGTC
TCGAGCGCCA CCGTCCGCCG CTTCCCGCGC GAGTGGCAAT TCGTGCTGGG CATTCTGCTG
AACGGCGTGC CCGAACGGAT CGCGGAGCGG CCGGCCGGGC CGGTGCTGAC GTCCTTCACC
ATGCGGGTGC GGTCGAAGAG CGATGCCACC TCGTTCCTGA TGAAGAAGCG GGCGGGCCTT
CAGCACACGG CCTCGACGCA GTTCGCCCGC TTCGCGACCG GCCTCTCGGA GAAGATGGCA
GAGTTCGAGG GGCTGAACCA GCAAGTCGAG CTCGGCGAGC GGCTGCTCGA CACGACCTAT
GTCGTCTGCG CCTATGCCAA GGGCACGGCC GAGGATGCGC GCCATTCCCT GGCCGAGGTG
GCGAAGATCT ACCGCTACGC CGGACTGGTG CTCGAGAACG ACACGTTCGT GCAGCTCCCG
GTCTTTCTCG CGGCGCTGCC GTTCGCGGTT CACGGCAAGC GCATGGAGGA TCTGAAGAAG
CTCCAGCGCA TGAAGATCCT CAAGTCCGAG GCTGCATCGG CGCTGGCGCC GATCCACGGC
GAATGGACCG GCAGCGGCAA CGGCCGGGGC GTCCTCCTGC TCGGCCGGCA GGGCCAGATC
ATGGATTGGG ACAACTTCGC CTCGGACGGC AACTACAACG TGGCCGTGGT GGGCAAGTCG
GGGGCCGGGA AATCCGTCTT CATGCAGGAG CTTGTCACCT CGATCTATGC GGCCGGCGGC
CGTGTCGTCG TGATTGACGA CGGCTACAGC TTCAAGAACA CGGTCGAGAT CCTGGGCGGC
ACCTTCGTGG GCTTCGACGG CTCGGTGCAG ATCCGCCTCA ACCCCTTCTC CATGCTCTCG
GCCGAGGACA TGGAAAAGGA CGAGTATCGC GCGGATGCGA TCGAGCTCGT GACCGGGATC
ATCGCCTCGA TGGCCGCGCT CGGCGAGGGC AAGCAGTCGC GCGTCGAAGA GTTCGAGGAG
GGCCGGATCT CCCGGATCGT GGCCGACGTC TGGGCCGAGA AGGGCGCGGC CGGCGAAGTG
ACGGACGTCT GGGAGCGGCT TCGCGCATTC GCGGAGGAGG ATCAGCGGCT CGCCGATGTG
GTGGTGAAGC TCGAGGCGTT CACGCGGAGC GGTCCTTACG GGCACTACTT CGCGGGGCCT
GCGACGCTCC GGCTCGAGAC GGCCTTCACG GTCTTCGAGC TCTCCGACAT CAAGGGGCAG
AAGGTGCTCC AGGACGTCGT GCTGCAGATC GTCATGTTTC TGGGCACCGA ACTCATGTTC
AAGACGCCGC GGGCGGTGCC GGTCGCCATC CTCATCGATG AGGCCTGGGA TCTCCTGAAG
TCTCACGCCA CGGCGCGCTT CATCGAAGGC GTGGTGCGGC GTGCCCGGAA ATACACCGGG
GCGCTCATCA CCGGCACGCA GTCGATTGAC GACTATTACA ACAACGTGGC CGCCACGGTC
TGCCTGCAGA ACTCCGACTG GACGGTGCTC CTCGCGCAGA AGGCGGAGAC CATCGACCGT
CTGGTGCAGG ACAGACGGCT CTCCGTCTCT CCGCACATCG CCGGCCAGCT CAAATCGCTC
CAGTCGGTGA AGGGTCTCTT CTCGGAAATG GGCGTGAAGG GTCCCAACGG CTGGTTCTTC
GGCCGCCTGC TCCTCGATCC GTTCAGCCTC GCGATCTATT CCTCGAAAGG GTCGACCGTC
GAGAAGATCA ACCGGCTGAA GGATCAGGGT TACACGACGG TCGAGGCGAT CCGCATCCTC
GTGGAGGAGG GGGCGGTCGA ATGA
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| Protein sequence | MSAFKALFQG LFDDPDWSED EPQALATDIV ADLLPYRLFD PESELFFNQN STGFLIEVNP
VVGADDVASN LQAVINSNAP NGATIQFLNW TSPDIDGQLV RWARHRLRGD ELVMEMAQRR
MAHLRGARFG TDHVIKALPH HRRVFVACWL DGDADLSQQK ELKNFRRSLY SVFGGEAYVR
HLGPDDFLKF LGEVLHCRGL VGISDLTYTA EEALNHQLPG AGLTVQRTAI GLMGEPPMAV
SSATVRRFPR EWQFVLGILL NGVPERIAER PAGPVLTSFT MRVRSKSDAT SFLMKKRAGL
QHTASTQFAR FATGLSEKMA EFEGLNQQVE LGERLLDTTY VVCAYAKGTA EDARHSLAEV
AKIYRYAGLV LENDTFVQLP VFLAALPFAV HGKRMEDLKK LQRMKILKSE AASALAPIHG
EWTGSGNGRG VLLLGRQGQI MDWDNFASDG NYNVAVVGKS GAGKSVFMQE LVTSIYAAGG
RVVVIDDGYS FKNTVEILGG TFVGFDGSVQ IRLNPFSMLS AEDMEKDEYR ADAIELVTGI
IASMAALGEG KQSRVEEFEE GRISRIVADV WAEKGAAGEV TDVWERLRAF AEEDQRLADV
VVKLEAFTRS GPYGHYFAGP ATLRLETAFT VFELSDIKGQ KVLQDVVLQI VMFLGTELMF
KTPRAVPVAI LIDEAWDLLK SHATARFIEG VVRRARKYTG ALITGTQSID DYYNNVAATV
CLQNSDWTVL LAQKAETIDR LVQDRRLSVS PHIAGQLKSL QSVKGLFSEM GVKGPNGWFF
GRLLLDPFSL AIYSSKGSTV EKINRLKDQG YTTVEAIRIL VEEGAVE
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