| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_1230 |
|---|
| Symbol | trmE |
|---|
| ID | 3719678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | - |
|---|
| Start bp | 3001667 |
|---|
| End bp | 3002953 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640072458 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_354312 |
|---|
| Protein GI | 77464808 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACACGA TCTACGCCTT GGCCAGCGCA CGCGGCAAGG CCGGAGTGGC GGTTTTGCGC
CTTTCCGGAC CGCGGTCGCA TGAGGCGGTG CAGGCGTTCG GCGTTCCTTT GCCTTCTCTC
CGGCACGCCG CCCTGCGGCG TCTGACGTGG AACGGTGAAG TTCTCGACGA AGCGCTGGTG
CTGCTCTTCG GCGCTGGCGC CAGTTTCACT GGTGAAACCT CGGCCGAACT GCATCTCCAT
GGTAGTCCTG CTGCCGTCTC TTCGGTGCTC CGGGTCCTGT CCGGCCTGCC CGGGCTGAGG
GCGGCCGAAG CCGGGGAGTT CACCCGCCGG GCCCTGGAGA ACGGTCGGCT CGACCTCGCG
CAGGTCGAGG GGCTGGCTGA CCTGATCGAT GCCGAGACGG AAGCTCAGCG CCGTCAGGCG
ATGCGGGTCT TTTCCGGCGC CATCGGTGAG CGGGCAGAGC GGTGGCGGGC GGACCTCATT
CGGGCAGCGG CGCTGCTCGA GGCGACCATC GATTTCGCCG ATGAGGATGT GCCGGTCGAT
GTGACGCCCG AAGTGCTGAC CCTGATCGAC GGCCTGTTGG CGGATCTTCG GCGGGAGGTC
GACGGATCGC GGATTGCGGA ACGGATCCGC GACGGATTCG AGGTCGCCAT CGTTGGCGCG
CCCAATGCCG GGAAATCCAC GCTTCTCAAT GCGCTGGCGC GAAGAGAGGC GGCGATCACC
TCTGAGATCG CCGGCACGAC GCGCGATGTA ATCGAGGTGC GGATGGATCT CGACGGGCTT
CCTGTGACCT TCCTGGACAC GGCGGGACTG CGGGACACGT CGGACCTTGT CGAGAGCCTT
GGCATCGAAC GCGCCGTGAC CCGGGCCAAG GCCGCGGACC TGCGTGTTTT CCTTCTGGAC
GACAGCGGAC CATTGTCCGG CATCACCGTT CAGGCTGATG ATCTGGTTGT GCAGGGAAAG
GCAGACCTTC GACCGGGGCA GGGGCTGCGC CTCTCGGGCC GGACGGGAGA GGGCGTGCCA
GAACTCGTGG CCGCCATCGG CGAGAGGCTT CTGGGACGCA CTGCAGGTGC CGGAAGTTTG
ACCCGCGAGC GGCACCGTCT CGCCATCGAA CGCGCAATCG GGGCTATGGA ATCGGTGCGG
GCTGAGCTAT TGAGGGGCCA ACAGCACACG GAACTGGCGG CAGATGACCT GCGACGCGCG
ATCCGCTCCC TCGACTCTCT CGTGGGGAGG GTGGATGTGG AGTCGCTTCT GGGCGAGATC
TTTGCCAGCT TCTGCATCGG GAAGTGA
|
|---|
| Protein sequence | MDTIYALASA RGKAGVAVLR LSGPRSHEAV QAFGVPLPSL RHAALRRLTW NGEVLDEALV
LLFGAGASFT GETSAELHLH GSPAAVSSVL RVLSGLPGLR AAEAGEFTRR ALENGRLDLA
QVEGLADLID AETEAQRRQA MRVFSGAIGE RAERWRADLI RAAALLEATI DFADEDVPVD
VTPEVLTLID GLLADLRREV DGSRIAERIR DGFEVAIVGA PNAGKSTLLN ALARREAAIT
SEIAGTTRDV IEVRMDLDGL PVTFLDTAGL RDTSDLVESL GIERAVTRAK AADLRVFLLD
DSGPLSGITV QADDLVVQGK ADLRPGQGLR LSGRTGEGVP ELVAAIGERL LGRTAGAGSL
TRERHRLAIE RAIGAMESVR AELLRGQQHT ELAADDLRRA IRSLDSLVGR VDVESLLGEI
FASFCIGK
|
|---|
| |