Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS05543 |
Symbol | RSp0078 |
ID | 1222626 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 87313 |
End bp | 88512 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637239937 |
Product | hypothetical protein |
Protein accession | NP_521639 |
Protein GI | 17548299 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.331898 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGGCCG CCCCTGCCTC CCCGACGCAA TCCGCCACCA CCGACACCCA GGGGCTGATC CGCCTGCTGA CGGCCGGTGC CGGCGTCAGC GTCGCCTGCA TCTACCTGAA TCATCCGCTG CTCGGCCTGA TCGGCCACGA CCTGAACATC GCGCCGCACG CGCTGGGCGT GCTGCCGACC CTGACGGCGG CCGGCTACGC CAGCGGCATT TTTTTCTTCG GCCCGCTGGG CGACCGCTAC GACCGCCGCG TGGTGATCCT GTGGAAGGCC GTGCTGCTGA CACTCGCGCT GATCGGCAGC TGCATCGCGC CCGGCCTGCC GGTGCTGGCC GCCGCCGGTT TCGTCATCGG CCTGGCGGCC ACCATCGCCC AGGATTTCGT GCCCAGCGCG GCCGCCATCA GCACCGACCT CAACCGCAAT CGCAACATCG GCACGGTGAT GACTGGGCTG CTGATCGGCA TCGTCGGCTC GCGGGTGTTC AGCGGCATCG TGGCCGACCA CTTCGGCTGG CGCGCGGCCT TCGGCGTGTC GGCGGCGGCG ATCGTGGGGC TGGCGCTGGC GGTGCGGGCG GCGCATTTCG GGGTGGCGCC GGCCACGCGG CAGCCGTATG TCACGCTGCT GCGCTCGCTC GGCACGCTGT TTGCGCGGCA TCCGCGGCTG CGGGCCTCCG CCTTCACGCA GGCGTTCCTC GCCGTGGCGT TCTCGGGGTT CTGGTCTACC GTGGCGCTGC ATTTGACCGG CACGATCGGG CTGTCGGCCG GGCAGGCCGG CCTGCTGGGC CTGGCCGGCG CGGCCGGGGC CCTGGGCGCG AGCATCGCCG GCCGGCTGTC GGGCCGCGTG GCGCCGGGCC ATATCGTGGC GGGCGGCGCG CTGCTGATGG CCGCGACCTT TGCCGCGATG GCGCTGTTCC CGCATTCCCT GCCCGCCATC GTGATCGGCA CGCTGCTGTT CGATGTGGGC GTGCAGGCGG CGCTGGTCTC ACACCAGACC ATCATCTACG CGCTGGCGCC GGAAGCGCGC AGCCGCATCA ACGCGGTCTT CATGACCATC ATGTTCATCG GCATGTCGGC CGGCGCCTAC GGCGCAAGCC TGGCGTGGAG CTACGCACAC TGGACCGGGC TGATGGCGTT CTGCACGGCG GCCTCGTCGA TCGGGCTAGG GCTGCGGCTG GCCTTCAACG CGCGGCTGGG GACACGTTAG
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Protein sequence | MPAAPASPTQ SATTDTQGLI RLLTAGAGVS VACIYLNHPL LGLIGHDLNI APHALGVLPT LTAAGYASGI FFFGPLGDRY DRRVVILWKA VLLTLALIGS CIAPGLPVLA AAGFVIGLAA TIAQDFVPSA AAISTDLNRN RNIGTVMTGL LIGIVGSRVF SGIVADHFGW RAAFGVSAAA IVGLALAVRA AHFGVAPATR QPYVTLLRSL GTLFARHPRL RASAFTQAFL AVAFSGFWST VALHLTGTIG LSAGQAGLLG LAGAAGALGA SIAGRLSGRV APGHIVAGGA LLMAATFAAM ALFPHSLPAI VIGTLLFDVG VQAALVSHQT IIYALAPEAR SRINAVFMTI MFIGMSAGAY GASLAWSYAH WTGLMAFCTA ASSIGLGLRL AFNARLGTR
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