Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS05538 |
Symbol | RSp0085 |
ID | 1222488 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 92483 |
End bp | 94939 |
Gene Length | 2457 bp |
Protein Length | 818 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637239944 |
Product | putative RHS-related protein |
Protein accession | NP_521646 |
Protein GI | 17548306 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.252151 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.640714 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATTTGCG CGAATGGCCC CGATGCGGTT GCCGAGATGA CGATTGCGGG CGTCAATAGC AAAAATGATG GAATCATGAA CGCGATCTGC AATGGCGGGT GCACGTATGA GTTCGATAGC GAGAACAACG GGAATTACTC CTACCGTTAC ATGGGCCCCC CCGATGGCAA GATGATCGGC GACTTCGCCG CGCTTCTGAC GGGGGAATGC GCGTCTGGAT ATACGAGGGA ATCTGACGGC ACCTGCCAGC CAAGGCCGCC GGTCCAGGTG TGTTCGGCCG GCAGCCCCGC CATCCCTGGC TCTGGCGTTG CAACGGTCTC GGAACGCGAT GGTGGCGGCA GCGCAGAACT TCCGATCACG CTTGCCTATC GCTCCTCCAG CCGCTATGGA AAGGGGGTCG GCGGCGGGCA ATGGATGCTC GGTTGGCAGC GTAGCCTGGA CACCAGCCTG GCGGCCGAAT CAACCCCGCA AGTTGCCGTG CAGCGCGATG ACGGGTCGGT CTCGACCTTC ACCCCGAACG GAACGGCCTG GTCAGCTTCG AACACGCAGG ATACGTTGCA GCCGATTACC GATGCCAATG GCAAGACGAC CGGCTGGCAG TACACGGTGG TCGATACAGG GGCGGCGGAG ACTTACGACA CCAGTGGCAA GCTTCAATCC GTCCGCGACC GCAATGGCCG CACCACGACG CTCGCCTACA ACGCCGCCAA CCAACTGACG ACAGTCACCG CCCCGAGCGG TCGCAGTCTT GCTGTTGCTT ACGACAGCCA GAACCGTGTG GCCAGCGTGA CCGCGCCGTC CGGCGCTGTC ACCGGCTATG GCTATAACGG CGCCGGCATA TTGTCGACCG TCACACACCC GGACGGTACG ACCCGCCAGT ACGTCTACGA AGACGGCCGC TTCCCGGCTG TACTGACCGG CATCATCGAC GAGAACGGCA ACCGCTACGC TACCTACGCC TATGACAGCC AAGCCCGCGC GATCAGCAGC ACGCTAGCGG GTGGTGTGAA TCAGTATCAG TTCCAATACG GCGACAACTA CCAGACCACC ATCACCGACC CCACGGGCAA GACCAGCGTC TATTCGTTCC TCAAGCAGAA CGGCGTCCTG CTGCCCACCT CCATTAGTGC CCCGTGCGGC CTGTGCGGCA GCACGCGCAA GAGCAGCAGC TATGACGCTA ACAACAACCT GACCCAGGAA ACCGACTACA ACGGTACCGT CACCACGCAC GCCTACGACA GCCAGAAGCG CGAGATCCAG CGGGTAGACG GTGCGGGCAC GGCCAGCGCC CGCACCACCA CCACCGAGTG GCACAAGATC TGGAACCTGC CGCTACGGAT TGCCTCGCCG ACCAAGCTGG AAACGTACAG CTACGACAGC AACGGCAACC TGACCCGCTA CAGCGAAACG CCGACCGCTG ACAGCGATGG TAGCCAGGGC ACCGGCGCTG CCGCGACTGG CGCAACCCGG ACCACCAACT GGACCTACAC CGCCGGCGGC CAGGTGGCGA CCAGCAGCGG CCCGCGCACG GATGTGGCCA CCAGCACCAC CTACGTCTAC CGCACCGCCG ACGATACCAA CTCGCCGCCG CTATACCGCA AAGGCGACCT GTACCAGATC ATCGATCCGC TGGGCCGTAC CACCACGATC AACCGGTACG ACGCCAGCGG CCGTCCGCTG CAGATGACGG ATGCCAACGG CATCGTCACC GCATTCACCT ACTCGAACCG CGGCTGGCTG ACCCGTCAGA CCATCACCCC GGCAGGCGAG GCGGGCCAGA CCACCAACTA CAGCTATGAC GCGGTGGGCC AGTTGACCAA GGTCACGCTG CCGGACGGCA GCAGTGTCAG CTTCGCCTAC GATGCCGCAC ACCGCCTGAC GGGCGCCGCC GACAGCCAGG GCAACAGCAT CGCCTACGTG CTCGACGCGA TGGGCAACCG CACCCAGGAG CAGGTCACGG ACCCCAACGG AGTCCTGACA CGACGGGTCG ACCGCGTGTT CGACTCGATG AACCGGCTCC TACGAGTCAC GCAGCAAGGA GCCTTGCCAT CCGGTTCGAC GTCCGATGCG CCGATCAAGG TGGTTCCGGC GGGCATCACC GCCTCCAGCA CTTCCGGCGA CAACGTGCCG GCCCGCGCGA TTGACGGGGA TCCCAGTGCC TGGATTGCCT CCGGCTATCC CACGCAGTGG ATCGAGGTCG ATCTTGGCGC GGCGGTGCCG CTCAAGAAAG TGCGGATGCT GGTTTCGCAG AGTCCTGCCG GCCAGACCAC GCACGTCGTG ACGGGCGGGA TGAATCCAGC GCCGACGAGC GTACTCCAGA CCCTCTCGGG CAACACGTCG GACGGGCAAT GGCTGGAAGC CGCCCTGGAT GGATCGGTCA GTGTCCGCTA CATCCGGATC ACTACGACGA GCAGCCCATC GTGGGTGTCC TGGCACGAAC TCGAGTTTTA CCGTTGA
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Protein sequence | MICANGPDAV AEMTIAGVNS KNDGIMNAIC NGGCTYEFDS ENNGNYSYRY MGPPDGKMIG DFAALLTGEC ASGYTRESDG TCQPRPPVQV CSAGSPAIPG SGVATVSERD GGGSAELPIT LAYRSSSRYG KGVGGGQWML GWQRSLDTSL AAESTPQVAV QRDDGSVSTF TPNGTAWSAS NTQDTLQPIT DANGKTTGWQ YTVVDTGAAE TYDTSGKLQS VRDRNGRTTT LAYNAANQLT TVTAPSGRSL AVAYDSQNRV ASVTAPSGAV TGYGYNGAGI LSTVTHPDGT TRQYVYEDGR FPAVLTGIID ENGNRYATYA YDSQARAISS TLAGGVNQYQ FQYGDNYQTT ITDPTGKTSV YSFLKQNGVL LPTSISAPCG LCGSTRKSSS YDANNNLTQE TDYNGTVTTH AYDSQKREIQ RVDGAGTASA RTTTTEWHKI WNLPLRIASP TKLETYSYDS NGNLTRYSET PTADSDGSQG TGAAATGATR TTNWTYTAGG QVATSSGPRT DVATSTTYVY RTADDTNSPP LYRKGDLYQI IDPLGRTTTI NRYDASGRPL QMTDANGIVT AFTYSNRGWL TRQTITPAGE AGQTTNYSYD AVGQLTKVTL PDGSSVSFAY DAAHRLTGAA DSQGNSIAYV LDAMGNRTQE QVTDPNGVLT RRVDRVFDSM NRLLRVTQQG ALPSGSTSDA PIKVVPAGIT ASSTSGDNVP ARAIDGDPSA WIASGYPTQW IEVDLGAAVP LKKVRMLVSQ SPAGQTTHVV TGGMNPAPTS VLQTLSGNTS DGQWLEAALD GSVSVRYIRI TTTSSPSWVS WHELEFYR
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