| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05480 |
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| Symbol | RSp1139 |
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| ID | 1223451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 1437516 |
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| End bp | 1439798 |
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| Gene Length | 2283 bp |
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| Protein Length | 760 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637241004 |
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| Product | Vgr-related protein |
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| Protein accession | NP_522700 |
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| Protein GI | 17549360 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.103681 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTTCA CCTCCACCGG GAACGGCGCC ACGCCGTCCG GCAATCGATT CTTTTCCTCT
CTTCCGGCCG GCGGGAACGC GCTGGACATG GGCACGCTCG CCAGCGCCGC GGCGATGCTC
GGCAACGTGC CCGGCGCGGG CCTGATCGGC GGGGCCGCGC GCGCGGCTGA GTTGGCCCAG
ACCGGCATGT CGCTGCTGGG CCGCACGCCG GCGTCTATCG CGGACGCGCT CAACAGTGCG
GCCGGCGCGC GCTCGCGCCT GACCCAGGAC AGCCGCTTCA TCCGGATGGA GTCGCCGCTC
GGGCGGGACG TGCTGCTCGT CAACGCGATG GTGGTCGACG AGTACGTCAA CCGGCTGCCG
GAAATCCATC TCGACCTGCT GTCGCACCAG GGTGATATCC AGATCGACCA GATCGTCGGC
CAGCCGGTCT CGATCCGGCT CGAGCCGAAG GCCAGCGGGA GTGCCCTGAG CCAGCTGATG
GCCGGTCCGG ACATCGGCAA GCGGACCTTC CACGGCTACG CGGCGTCGTT CGGGCGGGTG
GGCCATCCCG GCGCCGTCAC GCGCTACGAG ATGACGGTGG TGCCGTGGTT CTGGTTCCTG
ACCCGCTCGA CCGACTGCCG CATCTTCCAG AACCGGACCG CCGAGCAGAT CCTCTCGGAG
ATCTTCGTCG AGCTGGGCTT TCACGACTTC GAGTTCCATC TCAAGACGCC GCCGGCGACG
CTCGAATACG TCGTGATGTA CCGCGAGTCC TACTACAACT TCTGCGCGCG CCTGATGGAG
CAGGAGGGCA TGCTGTGGAC GTTCCGCTAT GAAGCGGACA AGCATGTGCT CGTCATCGGC
GACACCAACG ACACCTTCCG GCCGCTGGCG CCGGTGGATT CGATTCCGTA CTACGGCAGC
AGCGCAGCCA GCGAGCGCAA CGGCATCGAC CGCTGGGACG AGGCCTTCAG CTTCCGCGTG
GGCAAGATCA CCTATCGGGA CTTCAACTAC AGCACGCCGT CGTCGCCGCT GATGCACGTC
GAAGTGCCGA CCACGCTGAA GAACCCGAAC ATCGGCAGCA CCGAGCGCTA CGAGTACCAC
TCGATGTACG ACCTGGCCGA CGACGGCCGG CGCTATGCGC GCTACGCCAT GGAGGCCGAG
GAAGCGCAGG CGCACCGCTT CGAGGGCGCG GGCTTCGTGC AGGCCATGAC CACCGCCGGC
CGCTTCCGGC TGACGCACCA TCCGATGGCC GCCTACGACG ACAAGCAGTT CGTGATCCTG
CACGTCCGCC ACCACGCCGT GAACGACTAC ACGGGCCAGG CCGCCGAGCT GCCATACCGC
AACGCCTTCA CCTGCCTGCC GCTCGACGTG CCGTTCCGGC CGGAGCGTCG CACGCCCAAG
CCGTTCATGT ACGGCACCCA GGCGGCGCTG GTGGTCGGGC CCAAGGGCGA GGAGATTTAC
ACCGACGGCA GCCGCGTCAA GGTCCACTTC TTCTGGGACC GGCGCGGCAA GCTCGACGGC
TCGGACTCGA TCTGGGTGCG CGTCTCGCAG CCCTGGGCCG GCGCGGGCTG GGGCGGGGCG
GCGATTCCCC GCATCGGGCA GGAGGTCATC GTCGCCTTCA ACGAGGGCGA CCCCGACAAC
CCGGTGATCG TCGGGCGCGT CTTCAACGGC GAGGCCGCCA ACCCGTACCA CGGCGACAAC
GGCCAGACCA TGGGCATCCG CAGCCAGACG CACAAGGGCG GCGGCTCCAA CGAGCTGCGC
TTCTCCGACG TCAACGGCGC GCAGGAGGTC TACCTGCACG CGCAGAAGGA CATGAACACC
GTCGTGCAGG ATGCCCAGAG CACGCAGGTG CTCAAAGGCG ACCGGACCAT CCTCGTGTCC
ACGGGCAACC ATGCGACGGA GGTCTCCACC GGCAACATGA GCGAGGCGAT CCAGGGCGAC
CGCACCACGC TCGTCGCCAA GGGCAATCAC GAGACGACCG TCTCGACCGG CGACATGAGC
GAGACGGTTA GCCTGGGCGA TCGCACCATC ACCGTGGCCA AGGGCAACCA GGCGACCACC
GTCTCCGTCG GCAACCTGAC CACCACCGTC ACGCAGGGCG ATACCACGCA GAAGACGCCG
GCGGGCGTCC ACACCATCGA GGCCAAGGAG CTCTGGATCC GGGTGGGCGG CAGCGGTGGC
ACGTCCATCC ACATGACGGC CGATGCGATC GAGCTGCACA AGGGGTCTTC CACGATCCGG
CTGGACGGCG GCGAGATCAA GATCCAGGCG CCCAACACGC ACATCAACCC CGACAACGGC
TGA
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| Protein sequence | MSFTSTGNGA TPSGNRFFSS LPAGGNALDM GTLASAAAML GNVPGAGLIG GAARAAELAQ
TGMSLLGRTP ASIADALNSA AGARSRLTQD SRFIRMESPL GRDVLLVNAM VVDEYVNRLP
EIHLDLLSHQ GDIQIDQIVG QPVSIRLEPK ASGSALSQLM AGPDIGKRTF HGYAASFGRV
GHPGAVTRYE MTVVPWFWFL TRSTDCRIFQ NRTAEQILSE IFVELGFHDF EFHLKTPPAT
LEYVVMYRES YYNFCARLME QEGMLWTFRY EADKHVLVIG DTNDTFRPLA PVDSIPYYGS
SAASERNGID RWDEAFSFRV GKITYRDFNY STPSSPLMHV EVPTTLKNPN IGSTERYEYH
SMYDLADDGR RYARYAMEAE EAQAHRFEGA GFVQAMTTAG RFRLTHHPMA AYDDKQFVIL
HVRHHAVNDY TGQAAELPYR NAFTCLPLDV PFRPERRTPK PFMYGTQAAL VVGPKGEEIY
TDGSRVKVHF FWDRRGKLDG SDSIWVRVSQ PWAGAGWGGA AIPRIGQEVI VAFNEGDPDN
PVIVGRVFNG EAANPYHGDN GQTMGIRSQT HKGGGSNELR FSDVNGAQEV YLHAQKDMNT
VVQDAQSTQV LKGDRTILVS TGNHATEVST GNMSEAIQGD RTTLVAKGNH ETTVSTGDMS
ETVSLGDRTI TVAKGNQATT VSVGNLTTTV TQGDTTQKTP AGVHTIEAKE LWIRVGGSGG
TSIHMTADAI ELHKGSSTIR LDGGEIKIQA PNTHINPDNG
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