Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS05316 |
Symbol | RSp1271 |
ID | 1223583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 1607523 |
End bp | 1609862 |
Gene Length | 2340 bp |
Protein Length | 779 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637241134 |
Product | putative ferrisiderophore receptor protein |
Protein accession | NP_522830 |
Protein GI | 17549490 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.469557 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACCCC TCCAGCGCGC AACGGCTGCC ATGCCGCTGC GCACGCCGGT GTGCCGCGCC GTGCTCGCGC TCGCCGCTGC CGCACCGCTG TCCGCCTTTG CCGCCGTCGA TGCCGATGCC GTCGGGGCCG CGCCGGCTTT CGTCGCCCAG GAACTCGCGC CCACCGTGGC GCATGCCGGC ACGGCTTCCG CGCCGTTCGC CCGCAACACC CCCGCCGTGG TCCAGACCGT GACCGCCGAC CAACTGGCCG ACCGCAACCT CGTCACCGCC GAAGACGCGC TCAAGTACCA GCCCAACGTG ATGGTGCGCC GGCGCTTCAT CGGCGACCGC AATGCGATCT TCGCCGGCCG CGATTTCAAC GAGATCCAGA GCGCGCGGGG CCTGCTGTAC GCCGACGGCA TCCTGCTGTC GAACCTGCTC GGCTCCAGCT ACGGCTACCC GCCGCGCTGG TCGATGGTCG GCCCCGACGA CCTGGCCCGC GTCGATATCC TGTACGGGCC GTTCTCGGCG CTGCTGCCGG GCAACTCGAT GGGCACCACG ATTGCGCTCA CCCTGCGCAA GCCCGAGGCC TTCGAAGCCG GCGCGCAGAC CCAGGTCATG CGCCAGCACT ACAGCGATGC CTACGGCTTC TCGCGCAACG TCACCGGCAA CCACGAGAGC GCCTCGCTGG GCGATCGCAT CGGCCGGCTC TGGTATGCGC TGTCGGTCGA CCGGCTGGAG AACGACAGCC AGCCGATGCA GTACGCCACG CCCAATTCGG TCTTCACCGG CGGCCAGGCG AGCGTTCCGG TGACCGGCGC GGTGCGCGAT CTCGGCCCCG GCGGCCAGCC GCGCGTGATC CTCGGGGCGC AGATGCTCGA GCGCACGCAG CAGCTGCAGG AAACCCTGCG CCTGGGCTAC GCCTTCAGCG AACGCCTGGA GGCCACGCTC ACGCTCGGCC ACTGGGAGAA CCACTTCGCC GACCGCGCCG AAAGCTTCCT GCGCGATGCG ACCCCGGCGG CGGCAGGCAA CGTGGTCACC GGCGGCAATG TGCTGATCGG CGGCATGCCG TACACCATCG CCCAGAACGC CTTCGCGCCG CAGAACGGCG ATCAGGAGAA CTGGCTCTAC GGCCTCGGCG TCAAGGGCCG GGTGGGCGAC TGGAAGCTCG ATGCCAACGC TTCCGCCTAC GACGTCACGC GCGACATCCT GCGCGCATCG AACACGGCGT CGGCCGGCGG CCCCGGCACG GTGTTCTACG GCGACGGCAC GGGCTGGTCC AACTTCGACC TCAAGGCGGT CTCGCCCACG GTGTCGGGCC ATACCGTCAC GACCGGCTAC CACTACGACC AGTACCACCT GCGCAACCAG ACCTTCAACG CGAGCCACTG GCCCACCGAG ACGCTGTCGA CGCTCAAGTC CAGCTACCAG GGCGATACCC GCACGCAGGC CCTGTTCGCG CAGGATGCCT GGGCCTTCGC GCCGCGCTGG CTGGCGACGC TGGGGCTGCG CTACGAAACC TGGCGCGCCG ACAACGGCCG GCTCGGCAAC GCCGGCACTA CGCTGGGCTA CGCCGGACGC ACGGAAGACG CCTTCTCGCC CAAGGCGGCG CTGCAATGGC AGGCCACGCA GGACATGCTG CTGCGCTTGT CATACGGCCG CGCGGTGCGC TTCCCGACCG TGGCCGAGCT GTTCCAGGGC AGCATCAGCG GCAACACCAT CGTCAACAAC GACCCCAACC TCAAGCCCGA GCGCGCCAAT GATCTCGACT TCACCGTCGA GCAGGCGGTG CCCAGCGGCA TGCTGCGCGC CAGCCTGTTC CAGAGCGACG TGCGCGACAG CCTCTACACG CAGACCAACA TCACCGTCAC GCCCAACGTG ACCAGCGTGC AGAACGTCGA CCGCGTGCGC ACGCGCGGCA TCGAGCTGGC GTATTCCGGG CAGGATGTGG CGCGCGATCT GGGCGTGCGC GGCGTGGACA TCGAGGCCAA TGCCGCCTTC ACGCAAGCCA GGACGCTGGC CGATGCCGCC AACCCGGCCT ATGTCGGCAA GGTCTGGCCG CGCATGCCGC GCGTGCGGGC CAACCTGTTC GCCAGCTGGC ACGCGAGCGC CGGCTGGACT CTCGGCGCGG GGCTACGCTA TTCGGGGCGG CAGTACGGCA CGCTCGACAA CACCGACGTG CTGCCCGATG TCTATGGCGG CACCAGCCGC TTCTTCACCG TGGATCTCAA GGCCGGCTAC CGCGTCGACA AGCATGTCAC GCTGGCGCTG GGCGTCGACA ACCTGACCGA CCGGCGGTAC TTCGTCTATC ACCCGTATCC GTCCCGGACC TTTTATGGGC AACTGAAATG GCGTCTATGA
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Protein sequence | MSPLQRATAA MPLRTPVCRA VLALAAAAPL SAFAAVDADA VGAAPAFVAQ ELAPTVAHAG TASAPFARNT PAVVQTVTAD QLADRNLVTA EDALKYQPNV MVRRRFIGDR NAIFAGRDFN EIQSARGLLY ADGILLSNLL GSSYGYPPRW SMVGPDDLAR VDILYGPFSA LLPGNSMGTT IALTLRKPEA FEAGAQTQVM RQHYSDAYGF SRNVTGNHES ASLGDRIGRL WYALSVDRLE NDSQPMQYAT PNSVFTGGQA SVPVTGAVRD LGPGGQPRVI LGAQMLERTQ QLQETLRLGY AFSERLEATL TLGHWENHFA DRAESFLRDA TPAAAGNVVT GGNVLIGGMP YTIAQNAFAP QNGDQENWLY GLGVKGRVGD WKLDANASAY DVTRDILRAS NTASAGGPGT VFYGDGTGWS NFDLKAVSPT VSGHTVTTGY HYDQYHLRNQ TFNASHWPTE TLSTLKSSYQ GDTRTQALFA QDAWAFAPRW LATLGLRYET WRADNGRLGN AGTTLGYAGR TEDAFSPKAA LQWQATQDML LRLSYGRAVR FPTVAELFQG SISGNTIVNN DPNLKPERAN DLDFTVEQAV PSGMLRASLF QSDVRDSLYT QTNITVTPNV TSVQNVDRVR TRGIELAYSG QDVARDLGVR GVDIEANAAF TQARTLADAA NPAYVGKVWP RMPRVRANLF ASWHASAGWT LGAGLRYSGR QYGTLDNTDV LPDVYGGTSR FFTVDLKAGY RVDKHVTLAL GVDNLTDRRY FVYHPYPSRT FYGQLKWRL
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