| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4364 |
|---|
| Symbol | |
|---|
| ID | 4024889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 4827599 |
|---|
| End bp | 4829242 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637964574 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_571482 |
|---|
| Protein GI | 91978823 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2845] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.242924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACA AGCCGAAATC CCTGCTGGGC ATTCTGACCA GGCGCGGACC GCTGCTGGCG
ATCGCCGCGC TGCTGCTGGT CGGCATCGCG GGACCGGCTT CGGCGCAGTT CTTCGGCTTC
GGCGGCCCGC CGCAGCAAGC GCCACGCCCG CCGCGCGGCG TCGGAGGTTA CAACGGCGGC
GGCGGACTCT TCGGCAACGA CGTGTTCGCG CCGTTCCAGC ACCAGGCGCC GCGCCGCGCC
CCGGTGCGCG AGGACTATTC CCGCGCGCCC GCGGCCGAGA AGCGCGACGC CGTCTCCGAG
CGCAACGTCG TGGTGCTCGG AGACGCGATG GCCGACTGGC TCGCTTACGG CCTCGAGCAG
GCCTATGCCG AGCAGCCCGA CATGGGCGTG ATCCGCAAGC ACAAGACCGT CTCCGGCCTG
CTGCGCTACC AGCCCAAGGG CGAGCCCTCC GACTGGGTCG CCGCCGCCAA GGAGATCCTC
GCCGGCGAAA ACCCGGATGC GATCGTGGTG ATGCTCGGCC TTAACGACCG CACGCCGATC
AGCGAGCCGG TGGCCGAAAA GGACAAGAAG AAGGACGGCA AGGCGAAGCC CGAGGACGCC
GACAGCGCCG CCAAGCCCGA CGCCAGCAAG CCCGACGCCA ATAAGCCCGA CGACAAGACC
GCGGATAGCG ACGCAGCCGA CGATGACGAC GACGACGATG ACGGCACGCC GCAGATCATG
ACGCGGGAGA AATCGAAGCG CGCCGGCGCC AGCCAGTTCC GCGATGATCG TTGGGTCGAG
CTCTACAACA AGAAGCTCGA GGACATGATC AACGTTCTGA AGTCGAAAGG CGTGCCGGTG
CTGTGGGTCG GCCTGCCCGC GGTGCGCGGC ACCAAGTCGA CCTCGGACGC GCAGTTCCTC
AACGCGCTGT ATCGCGACGC CGCCGGCAAG GCCGGCATTA GTTACGTCGA CGTCTGGGAC
GGCTTCGTCG ACGAGGCCGG ACGCTATCTG CTGCAGGGCC CGGACTTCGA GGGCCAGACC
CGCCGGCTGC GCTCCTATGA CGGCGTGTAT TTCACCAAGG CCGGCGCGCG GAAGCTGGCG
CATTATGTCG AGCGCGAGAT CGCCCGCCTG CTCGCCGCCC GCGCTGCGCC GGTCGCTCTG
CCGACCGAAC CTGGCACGCC GGATGCGAGC GCCAAGCCGG GCGGCCCCGC ACCGCGACCT
ATCGCCGGCC CGATCATGCC GCTGGTGGCG TCTTCGGTCT CGACCGATCG TCTGCTCGGC
GGCCCCGGCA TCGCGCCCGC GCCGGTCGAT GCGCTGGTCG CGCGCACGCT GGTGAAGGGC
GAGCCGCTCG CCGCGCCGGC CGGCCGCGCC GACGATTACG CCTGGCCGCG CCGCGAGATC
GTAGTGGAGC GCGCGCAGGA ACCGCCGCCG ACGAAGGAGC CGCCGAAGAG CGCGGTGCCG
ATGGCGAGCA CCAATCCGGG CGGCGCCGCG CCCAACGCGG CCGGACAGCA GCCGCAACAG
CAGAAGCGCG TCGCCCGCGC CGCGCCGCCG CCTCCGGCCG CCTCCGGCTT CTTCGGCTTC
GCGCCCGCGC CGCAGCAACC GCAGATGCGC CGCCCGCCAC CTCCGCCGCC GACCGCGTCG
GGCTTCTTCT CGATCTTCCG CTGA
|
|---|
| Protein sequence | MSDKPKSLLG ILTRRGPLLA IAALLLVGIA GPASAQFFGF GGPPQQAPRP PRGVGGYNGG
GGLFGNDVFA PFQHQAPRRA PVREDYSRAP AAEKRDAVSE RNVVVLGDAM ADWLAYGLEQ
AYAEQPDMGV IRKHKTVSGL LRYQPKGEPS DWVAAAKEIL AGENPDAIVV MLGLNDRTPI
SEPVAEKDKK KDGKAKPEDA DSAAKPDASK PDANKPDDKT ADSDAADDDD DDDDGTPQIM
TREKSKRAGA SQFRDDRWVE LYNKKLEDMI NVLKSKGVPV LWVGLPAVRG TKSTSDAQFL
NALYRDAAGK AGISYVDVWD GFVDEAGRYL LQGPDFEGQT RRLRSYDGVY FTKAGARKLA
HYVEREIARL LAARAAPVAL PTEPGTPDAS AKPGGPAPRP IAGPIMPLVA SSVSTDRLLG
GPGIAPAPVD ALVARTLVKG EPLAAPAGRA DDYAWPRREI VVERAQEPPP TKEPPKSAVP
MASTNPGGAA PNAAGQQPQQ QKRVARAAPP PPAASGFFGF APAPQQPQMR RPPPPPPTAS
GFFSIFR
|
|---|
| |