| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4292 |
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| Symbol | |
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| ID | 4024815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4753184 |
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| End bp | 4754422 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637964500 |
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| Product | putative urea/short-chain amide transport system substrate-binding protein |
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| Protein accession | YP_571410 |
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| Protein GI | 91978751 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | [TIGR03669] urea ABC transporter, substrate-binding protein, archaeal type |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0103855 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGATCGA GACGACTGCT CCAAACTGCT TTTCTCGGCC TCGCGCTCGG CGCCATTGCG
CCGTTGGCGA CGCAGGCGGC CGAACCGCCG CTGAAGGTCG GCCTGCTCGA AGACATCTCC
GGCGATCTCG CCTTCATGGG TATGCCGAAG TTGCACGGCT CGCAGCTCGC GGTCGAGGAA
ATCAACAAGA GCGGCGGCAT CCTCGGCCGG CAGATCGAGC TGATCCATCT CGACCCGCAG
GGCGACAACG CCCGTTACCA GGAGTTTGCC CGGCGGCTGC TCAATCGCGA CAAGGTCGAC
GTCCTGATCG GCGGCATCAC CTCGGCGGCG CGCGAAGCAT TGCGTCCGAT CGTCGGCCGC
ACCTCGACGC CGTATTTCTA CACGAACCAG TATGAAGGCG GCGTCTGCGA CGCCAGCATG
ATCAGCATGG GCGCGGTGCC CGAGCAGCAG TTCTCGACGC TGGTTCCCTG GATGGTGGAG
AAGTTCGGCA AGAAGGTCTA CGTCGTCGCC GCCGACTACA ATTTCGGCCA GATCTCGGCG
GAATGGAACC GCAAGATCAT CAAGGATCTC GGCGGGCAGG TGGTCGGCGA GGAGTTCATC
CCACTCGGAG TCTCGCAATT CGCGCAGACC ATCCAGAACA TCCAGAAGGC GAAGCCCGAC
TGGTTGCTGA CGATCAATGT CGGCGCCGCG CAGGATTCGT TCTTCGAACA GGCGGCCGCG
GCCAATCTCA ATCTGCCGAT GGGGTCGTCG ATCAAGGTGA TGCTCGGCTT CGAGCACAAG
CGCTTCAAGC CGCCGGCGCT CAACAACATG CACGCCACCG CGAACTGGTT CGAGGAAATC
GCCACGCCCG AGGCGGAGGC TTTCAAGAAG CGCTGGCGCG CCAAGTTCCC CGACGAAACC
TACATCAACG ACATGGGCTA CAACGCCTAC AACGCGCTGT ACATGTACAA GACGCTGGCG
GAAAAGGCGA AGTCGACCAA GCTCGAAGAC CTCCGCAAGG TGATCGCGAC CGGCGAAGCC
TGCATCGATG CGCCCGAAGG CAAGGTCTGT ATCGATCCGA AGAGCCAGCA CACGTCGCAC
CGGATGCGTC TGATCTCGGT CGGACCCAAG CACGACGTCA CGGTCGTCAA GGACTACGGC
ACGATCCAGC CCTACTGGCT CGGCGAGGTC GGCTGCGACC TCACCAAGAA GAACGACAAG
GAACAGTACA CGCCCAATCA GCTGCCGAAG AAGTCGTGA
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| Protein sequence | MRSRRLLQTA FLGLALGAIA PLATQAAEPP LKVGLLEDIS GDLAFMGMPK LHGSQLAVEE
INKSGGILGR QIELIHLDPQ GDNARYQEFA RRLLNRDKVD VLIGGITSAA REALRPIVGR
TSTPYFYTNQ YEGGVCDASM ISMGAVPEQQ FSTLVPWMVE KFGKKVYVVA ADYNFGQISA
EWNRKIIKDL GGQVVGEEFI PLGVSQFAQT IQNIQKAKPD WLLTINVGAA QDSFFEQAAA
ANLNLPMGSS IKVMLGFEHK RFKPPALNNM HATANWFEEI ATPEAEAFKK RWRAKFPDET
YINDMGYNAY NALYMYKTLA EKAKSTKLED LRKVIATGEA CIDAPEGKVC IDPKSQHTSH
RMRLISVGPK HDVTVVKDYG TIQPYWLGEV GCDLTKKNDK EQYTPNQLPK KS
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