| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3764 |
|---|
| Symbol | |
|---|
| ID | 4024280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4200367 |
|---|
| End bp | 4201299 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637963968 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_570886 |
|---|
| Protein GI | 91978227 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0408] Coproporphyrinogen III oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.323401 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00503136 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCGA AAGCGCAACG GATCATGGCC ATGACGATCG ACACTGAACT CGACACCGCG
ACAACGAGCC GCGTCGAACA CCAGCGGGCG CAGGCCCGCA CCTGGTTCGA AAGCCTGCGC
GACAGGATCT GCGCGGAGGT CGAGGCGCTG GAGCGCGAAG CGCCGGCCGA GCTGTTCCCC
GGCACGCCCG CGACCTTCAC CTACAAACCG TGGCAGCGGA AGACTGGCGC CGGCGGCGGC
GTTGGCGGAT TTCTGTCGAA TGGCCGGCTG TTCGAGAAGA TCGGCATCCA CACGTCTTCG
GCCAACGGCC GGCTCACGCC TGAAATGGCG AAGACTCTGC CGGGCGACGG CCAGAGCCTG
GATTACGTCT CGACGAGTAT CAGCCTGATC ATGCATCCGC GCAGTCCGCG GGTGCCGACC
GTCCACATGA ACACGCGGTT TCTCTCGACC GCGCAGGGCT GGTTCGGCGG CGGCGCGGAT
CTGACGCCGA TGCTGCCTGA GCAACGCAGC CAGGACGCCG AGGATGCTGT GACCTTTCAC
GCCGCGATGA AGCGCGCTTG CGACGCCCAT GATCCGGGCT ACTACGGCAA GTTCAAACCT
TGGGCGGACA CCTACTTCTT TCTGCCGCAT CGCGGCACTG CGCGCGGCGT CGGCGGCATC
TTCTACGATC ACCTCAACAG CGGCGATTTC GACCGCGACT TTGCCTTCAC CCGCGACGTC
GGGCTGGCGC TGCTCGCGGT CTATCCGAAG ATCGTGCGCC AGCGGATGCA GGAATCGTGG
ACCGAAGAGG AGCGCGCCCA GCAGCTCGCC TGCCGCGGGC TCTATGTCGA GTTCAATCTC
TTGTACGATC GCGGCACGAT GTTCGGGCTG CAGACCGGCG GCAACACCGA GACCATCATG
AGTTCGATGC CGCCGCTGGT CAGTTGGAGC TGA
|
|---|
| Protein sequence | MASKAQRIMA MTIDTELDTA TTSRVEHQRA QARTWFESLR DRICAEVEAL EREAPAELFP
GTPATFTYKP WQRKTGAGGG VGGFLSNGRL FEKIGIHTSS ANGRLTPEMA KTLPGDGQSL
DYVSTSISLI MHPRSPRVPT VHMNTRFLST AQGWFGGGAD LTPMLPEQRS QDAEDAVTFH
AAMKRACDAH DPGYYGKFKP WADTYFFLPH RGTARGVGGI FYDHLNSGDF DRDFAFTRDV
GLALLAVYPK IVRQRMQESW TEEERAQQLA CRGLYVEFNL LYDRGTMFGL QTGGNTETIM
SSMPPLVSWS
|
|---|
| |