| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3647 |
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| Symbol | |
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| ID | 4024161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4071826 |
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| End bp | 4072782 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637963851 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_570771 |
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| Protein GI | 91978112 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.547068 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACGC CCATTGCAAT GATCATCGGC GCACTCGCCG TCTTAGCTGC CGGTGCCGCT
TTCTATGCGG TCACGCCCGG CAAATCCTCC GAACCTGCCT CGAAGGAAGC GAAGCAGGAA
GAGAAGGGAC ATGAGGAAGA GGGCGTCGTC GAAATGTCCG ACGCGAAAGT TTCGTCCTCG
AACATCGAAA TTCTTTCCGC TTCGCAGGCG ACGTTGAACG ACTCGATCGT CCTGAACGGC
ATCATCCAGC CCAATCAGGA GATGCTGGTG CAGGTCACGC CGCGCTTTCC TGGCGTCGTC
CGCGAGATCA AGAAGCGCAT CGGCGATCCC GTCGAGAAGG GCGAACTGCT CGCCAAGATC
GAGAGCAACC AGAGCCTGAC GACGTACGAA ATGCGCGCTC CGATCTCCGG AACGGTGATC
GACCGCCAGA TTTCGCTAGG CGAATACGCC TCCGAACAGA AGCCTTCCTT CATCGTTGCC
GACATCTCGA CCGTCTGGGT CGACCTGTCC GTCTACCGCC GGGACCTGTC GCGCGTGAAG
GTCGGCGATA CCGTGGTCAT CGACGTAGGC GACGGAGGAA AGCCGATCGA AGCCAAGATC
TCCTACGTAT CGCCGGTGGG CAGCAGCGAC ACCCAGAGCG CGCTGGTGCG CGCCGTCGTC
CAGAACGAAG GCCTGCGGCT TCGCACGGGA CTGTTCGTGT CGGCGCGTCT GATCCTGTCC
GCAAAGAAGG TGGAGGTTGC CGTGAAGGCC GCCGCGATCC AGTCGGTGGA GAACCGGAAC
GTCGTGTTCG TCCGGAGCGG CGACAAGTTC GAGGTACGCG ACGTCGAGAT CGGCGCCCGC
GATCCGGAAC ACGTGGAGAT CGTTTTCGGC CTTCTGGAGG GCGACAAGTA TGCCGCCAAG
AACAGCTTCA TCGTGAAGGC GGAACTTGGG AAGGGCAGTG CCGGTCATGA GCACTAA
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| Protein sequence | MKTPIAMIIG ALAVLAAGAA FYAVTPGKSS EPASKEAKQE EKGHEEEGVV EMSDAKVSSS
NIEILSASQA TLNDSIVLNG IIQPNQEMLV QVTPRFPGVV REIKKRIGDP VEKGELLAKI
ESNQSLTTYE MRAPISGTVI DRQISLGEYA SEQKPSFIVA DISTVWVDLS VYRRDLSRVK
VGDTVVIDVG DGGKPIEAKI SYVSPVGSSD TQSALVRAVV QNEGLRLRTG LFVSARLILS
AKKVEVAVKA AAIQSVENRN VVFVRSGDKF EVRDVEIGAR DPEHVEIVFG LLEGDKYAAK
NSFIVKAELG KGSAGHEH
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