| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3557 |
|---|
| Symbol | |
|---|
| ID | 4024071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3955357 |
|---|
| End bp | 3956235 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637963761 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_570681 |
|---|
| Protein GI | 91978022 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.258255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTTC TACTGAATCA GGTTCTGGCA GGCATCGCCA CGGGCGCCAT TTACGCATGT
ATGGCGTTGG CCGTGGTGAT GATCTATCAG GCGATCGACC ACCTCAATTT CGCCCAGGGC
GAAATGGCGA TGTTCTCCAC CTTCATCGCC TGGCAATTGT TGCAATGGGG CGTACCGTAT
TGGGGCGCCT TCGTACTGAC GCTGGCGTTG TCCTTCGCCG GCGGCATCGT CATCGAGCGG
GCGTTGTTCA AGCCGCTCGG CAATGCGCCG GTGCTGACCC ACGTCGCCGG CTTCATTGCG
CTGTTCGCGA TCATCAATTC GATCGCGGGC CTGACCTGGG ACTTCACCAT CAAGCAGTTC
CCGTCGCCGT TCGGCTCGTC GCCCTTCCTG GGCAGCCAGC TGATCTCGAC GCATCAAGCC
GGCATGATCG GCGTCACGCT GGTGCTGCTG CTGCTGCTCT ACTTCTTCTT CCAGTTCACC
CGGATCGGGC TCGCGATGCG GGCGGCTGCG GCGCAGCCGG AATCCGCCCG GCTGGTCGGC
GTCAACACCT CGTGGATGGT GGCGCTGGGC TGGGGCATGG CGGCGGCGAT CGGCGCGATC
GCCGGGATGC TGATCGCTCC TGTGGTGTTC CTGGAGCCCA ACATGATGGG CGGCGTGCTG
ATCTACGGTT TCGCGGCTGC GGTGCTCGGC GGGCTGTCGA GCCCGTTCGG CGCGGTGGTC
GGCGGCTTCC TGGTCGGCAT CTTCGAGAAC CTCGCCGGGA CCTACATCCC CGGCGTCGGC
AACGAGCTGA AGCTACCGAT CGCGCTGGCG CTGATCATCA CCGTCCTGGT CGTCAAACCC
ACGGGCCTGT TCGGCCGTGC CATCGTGAAG CGAGTCTGA
|
|---|
| Protein sequence | MELLLNQVLA GIATGAIYAC MALAVVMIYQ AIDHLNFAQG EMAMFSTFIA WQLLQWGVPY
WGAFVLTLAL SFAGGIVIER ALFKPLGNAP VLTHVAGFIA LFAIINSIAG LTWDFTIKQF
PSPFGSSPFL GSQLISTHQA GMIGVTLVLL LLLYFFFQFT RIGLAMRAAA AQPESARLVG
VNTSWMVALG WGMAAAIGAI AGMLIAPVVF LEPNMMGGVL IYGFAAAVLG GLSSPFGAVV
GGFLVGIFEN LAGTYIPGVG NELKLPIALA LIITVLVVKP TGLFGRAIVK RV
|
|---|
| |