| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3407 |
|---|
| Symbol | |
|---|
| ID | 4023920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3789603 |
|---|
| End bp | 3790259 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637963612 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_570532 |
|---|
| Protein GI | 91977873 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0155576 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.84746 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAAA CCCAGGCCGC CACCTCCGTT CAAGGCCACG ATGAGGACTG CGCCAAGCGC
CGTCAGATCA TCAAGGGCGC GCGCACGGTG TTCCTCGAAC AGGGCTTCGA CGGCGCCAGC
ATGGGCGAGA TCGCACGCGC CGCGGGAGTC TCCAAAGGGA CGCTCTACGT CTACTTCACC
GACAAGAATT CGCTGTTCTG CGAGATCATC GAACAAGAGA GCATCGCCCA GGGCATGCTG
TCGTTCGACT TCATGCCGGA GCGCGACATC GAAACCACGC TCAAAGTGTT CGGCACAGCC
TACATCAAGT TGCTGTGCAA CCCGCGCGGG GCATCGGCGA TCCGCACGGT GATGGCGATC
GCCGAACGGA TGCCGGACAT CGGCCAACGC TACTACGAGC GAGTGATCGC AAACTCACTC
GGCCGTTTCG CGCGCTATCT CGACCAGCAG GTGAAATCCG GCACGCTGGT CATCGACAAT
TGCGACCTCG CCGCGGCCCA GTTCACCAAA TTGTGCCAGG CGACGCTGTT TCTGCCGTTC
ATTTTTCAGA TGACGGAAAC GCCCTCCTCC GAGCGCATCG CCGAGGTGGT GGACAGCGCC
ACCCGAATGT TCCTCGCCGC CTATCGCGCC AAGCCGAACG ACGGCAGGCC GAGCTGA
|
|---|
| Protein sequence | MVETQAATSV QGHDEDCAKR RQIIKGARTV FLEQGFDGAS MGEIARAAGV SKGTLYVYFT
DKNSLFCEII EQESIAQGML SFDFMPERDI ETTLKVFGTA YIKLLCNPRG ASAIRTVMAI
AERMPDIGQR YYERVIANSL GRFARYLDQQ VKSGTLVIDN CDLAAAQFTK LCQATLFLPF
IFQMTETPSS ERIAEVVDSA TRMFLAAYRA KPNDGRPS
|
|---|
| |