| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3406 |
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| Symbol | |
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| ID | 4023919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3788171 |
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| End bp | 3789430 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637963611 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_570531 |
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| Protein GI | 91977872 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0814588 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGAC GCGATCAGGC TGCCCGAGTT CGTCGCGCCG GGCCGGACAG CGCGCCGGCC
GAATCCGGCG CCGATGTCCC GCAGCCGCAA GCCCCGTCGC AGGCGGAGAC GCTGCGCTCG
TTGCTGGAGG ATCCCGCGAC GCTGAAGCTC GCCGATCCGC CGGAGCCGGA GCTGGACGAC
GAGGCGGTCG CGCCGGTTGC GAAGCCCGCG GCGGCAGCAA GGAAGCCCGG CAAGAAAAGG
CTGGTCCTGA TCGGCGTCGG CATCGCGGCG CTGGCCGCGG CCGCGTATTA CGGCATCGAT
TACATGCTGG TCGGCCGCTT CATGGTGTCG ACCGACGACG CCTATGTGCG GGCCAACAAC
ACCACGCTCG GCGCCCGCGT CGCCGGCCAT GTCGCCGCCA TCCTGCCGCG TGACAACGCC
GTCGTCAAAG CGGGCGACGT GGTGTTCAAG ATCGATGACG GCGACTACAA GATCGCGGTC
GACGCCGCCC GCGCCAAGAT CGCCACCCAG CAGGCGACGA TCGAACGGAT CGGCCGGCAA
GTCTCCGCGC TGCAGAGCGC CGTCGAGCAG GCGCAAGCGC AGCGCGACTC CGCCGAGGCC
GCGGCCAAGC GCGCTGCGCT CGATTTCGAT CGCCAGCAGG CGCTCAGCAC CAAGGGGTTC
GCCTCGCGCG CAACCTTCGA GGTGTCTCAA GCCGGCCGCG ACCAGGGCGT CGCCTCGGTG
GCCGCCGCCA AGGCCGCGTT CGATGCCGCG CGTGACAATG TCGAGGTCAC CAAGGCGCAG
CAAAACGAAG CGCGCGCCCA GCTCGTCGAG CTGCAGAGCT CGCTCGCCAA GGCCGAGCGC
GATCTCGACT TCACCAATGT CCGTGCGCCG GTCGAGGGCG TGTTCTCCAA CCGGCTCGTC
AATACGGGCG ACTTCATCCA GGCCGGCCAG CGGCTCGCCA ACATCGTGCC GCTCGACGGG
GTCTATGTCG ACGCCAACTT CAAGGAAACC CAACTCGGCC GGCTGAAGCC CGGCCAGAAG
GTCGACATTT CGGTCGACGC TTACTCCAGC CGCAAGATCG AGGGCACGGT CGACAGCCTG
GCGCCCGCGG CCGGTCAGGT GTTCACGCTG CTGCCGCCCG ATAACGCCAC CGGCAACTTC
ACCAAGATCG TGCAGCGCGT GCCGGTGCGG ATCCGCGTCC CGGCCGAGGT GGCGCGCGAG
AATCTGCTGC GCGCCGGCAT GTCGGTCTAC GTCCGCGTCG ACACCAAGCC GGCGAACTGA
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| Protein sequence | MSGRDQAARV RRAGPDSAPA ESGADVPQPQ APSQAETLRS LLEDPATLKL ADPPEPELDD
EAVAPVAKPA AAARKPGKKR LVLIGVGIAA LAAAAYYGID YMLVGRFMVS TDDAYVRANN
TTLGARVAGH VAAILPRDNA VVKAGDVVFK IDDGDYKIAV DAARAKIATQ QATIERIGRQ
VSALQSAVEQ AQAQRDSAEA AAKRAALDFD RQQALSTKGF ASRATFEVSQ AGRDQGVASV
AAAKAAFDAA RDNVEVTKAQ QNEARAQLVE LQSSLAKAER DLDFTNVRAP VEGVFSNRLV
NTGDFIQAGQ RLANIVPLDG VYVDANFKET QLGRLKPGQK VDISVDAYSS RKIEGTVDSL
APAAGQVFTL LPPDNATGNF TKIVQRVPVR IRVPAEVARE NLLRAGMSVY VRVDTKPAN
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