| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3077 |
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| Symbol | |
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| ID | 4023580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3424636 |
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| End bp | 3425958 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637963276 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_570204 |
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| Protein GI | 91977545 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00148769 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.638845 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAGTG AACTGTTTCG ACGAAGGGCC CGGACGTGGT CCCTGCTTGG CATCGCCTGT
GTGACCGTAG CGCTGGCCCT CCCCGCCAAC CGGTCGATGG CGGCCGATTG CCCGGGAAAC
CCCGGCGCGC TCGGGACCTC CCGGACGCTG GTTGTGGATC CGCGCGAGCA TCCGCGGATC
GGCACGATGC AATACGCCGA GACGCTGCCG CTCCAGGACC ATGAGGTGGT GCTGACCTTC
GACGACGGCC CGCTGCCGCG TCACAGCAAT GCCGTGCTCG ATATTCTCGC CAAAGAATGC
GTCAAGGCGA CGTTCTTCGT GGTCGGTCGG ATGGCGAAGG CCTATCCGGA CGGCGTGCGC
AGAATGCACG ACGCCGGCCA CAGCATCGGC ACCCACAGCC ACAACCATCC GCTCAGCTTC
CACCGGATGA CGGTCGAGCA GGCCAAGCAG GAAGTCGATG AGGGCATCGA CGCGGTCGCG
ACCGCGCTTG GCGACCGCGC GGCGGTGGCG CCGTTCTTCC GGATTCCCGG CCTGCTGCGG
GCCGAGGCGG TCGAAGGCTA TCTCGGCTCC CAGGGCATCC AGACCTGGAG CGCCGACTTC
CCCGCCGACG ACTGGCGGCA CATTTCGCCG GCCGCCGTCT ATGGCCTAGC CATGAGCCGG
CTGCAGGCCA AGGGGCGCGG CGTGCTGCTG CTCCACGACA TCCAGCCGCG CACGGTGGCG
GCGCTGCCGC AGATCCTGCA CGAGCTGAAG GCCCGCGGCT TCCGCATCGT GCATGTTGTG
CCGGCGACGC CGGATCGGCC GAAGACGCCG ACCGAGCCGT CGCAATGGCG GCTGCGTCCG
ATCACCGAAC AGGTTGCGAT CTCGCGTTGG CCGAAGGTGC CGAGCTTCAG CTTCGCCAAC
GCCGAGATGC TGCCAGGGCC CGCGGTCTCC GATCTTGGTC TCAATGCCGG CCACATGACG
GAGTCGGTCG GTGGCCCCAG GCATCTGGCG CGCGGCCAGA CGCCGCTGCC CAAGCGCGCG
CCGTGGCCGC GACAGACCCC GATGGCGGCG TCCGCGAATC TGATCGCCTT CCCGATTCCT
GCGGGAGTCC TGTTCAGCAT CCCGGAAAAG AGCCAGCCGG CGATCCGGGC GATGATTCCC
GTCGCGTCGC ATCATGCGAC GGCCGGCGCC GGGCTGGGCG CGACCAAGCT GGACGAAGCT
GCGCCAGCGA CCGCCGCCGG CGCCCCGGTC CGCCAGATCT CCGGCAGCGC CGCGATCGCG
CCCGCCGCCC TGCAGCGCGG CCCGATCGGC CTCACCGCAC GGCCGCGACC ACTCAATCAT
TAG
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| Protein sequence | MASELFRRRA RTWSLLGIAC VTVALALPAN RSMAADCPGN PGALGTSRTL VVDPREHPRI
GTMQYAETLP LQDHEVVLTF DDGPLPRHSN AVLDILAKEC VKATFFVVGR MAKAYPDGVR
RMHDAGHSIG THSHNHPLSF HRMTVEQAKQ EVDEGIDAVA TALGDRAAVA PFFRIPGLLR
AEAVEGYLGS QGIQTWSADF PADDWRHISP AAVYGLAMSR LQAKGRGVLL LHDIQPRTVA
ALPQILHELK ARGFRIVHVV PATPDRPKTP TEPSQWRLRP ITEQVAISRW PKVPSFSFAN
AEMLPGPAVS DLGLNAGHMT ESVGGPRHLA RGQTPLPKRA PWPRQTPMAA SANLIAFPIP
AGVLFSIPEK SQPAIRAMIP VASHHATAGA GLGATKLDEA APATAAGAPV RQISGSAAIA
PAALQRGPIG LTARPRPLNH
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