| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2850 |
|---|
| Symbol | |
|---|
| ID | 4023348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3176731 |
|---|
| End bp | 3177882 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637963048 |
|---|
| Product | peptidase M50, putative membrane-associated zinc metallopeptidase |
|---|
| Protein accession | YP_569979 |
|---|
| Protein GI | 91977320 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.786377 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGATA TTTTTATGAA TGGGTTCAGC ACGTTGAGCC ACGGAATCGT GGGTTACGTG
GTGCCCTTTC TGTTCGTTCT GACGATCGTC GTGTTCTTCC ATGAGCTCGG CCATTTTCTG
GTGGCGCGCT GGAATGGCGT GAAGGTGCTG ACGTTTTCGC TCGGCTTCGG TCCGGAGATC
GCGGGCTTCA ATGACCGTCA CGGCACGCGC TGGAAGCTCT CGGCGATTCC GCTCGGCGGC
TACGTCAAAT TCTTCGGCGA TGACAGCGAG GCCAGTACGC CGTCGAACGA TTCTCTGTCG
AAAATGAGCG CGGACGAGCG CTCGGTCAGC TTCCATCACA AGGGCGTCGG TCCGCGTGCG
GCGATCGTCG TCGCCGGGCC GCTGGCCAAT TTCATCCTTG CAATCGTGCT GTTCACCTTC
CTGTTCGCGG TGTTCGGCGT GCCGAGCACC TCGGCTCGGG TCGATGCCAT CCAGCCGGGC
AGCGCCGCGG AGGCGGGCGG CTTCCAGGCC GGCGACGTGA TTCTGGCGAT CGACGGCAGC
CCGATTCACA GCTTTCTCGA CATGCAGCGC AAGGTCGGCG GCGACGCCGG CCGGGAGATG
AAATTCACGG TCCAGCGCGG CAGCTCGACC ATCGATCTGA AGGCGACGCC GGAGCTGCGC
GAGATCAAGG ACCGGTTCGG CAACGTCCAG CGCCTCGGCA TCCTCGGCAT CAGCCGCTCC
ACGACCGCAA ACGAGGCCAC GACCGAGCGG GTCAACCCGG CCGTCGCGGT CTGGATGGGA
ATCAAGGAGA CCTGGTTCGT CGTCGACCGG ACCTTCTCCT ATATCGGCGG CCTGTTCGCC
GGCCGCGAGG CGGCCGACCA ACTCGGCGGT CCGTTGCGAA TCGCCCAGAT CTCTGGACAG
GTCGCGACCA TCGGCTTTAC GCCGCTGCTC CATCTGGCTG CGGTGCTGTC GATCTCGATC
GGTCTTCTCA ACCTGTTTCC GGTTCCGTTG CTCGATGGCG GCCACCTGAT GTTCTATGCG
ATCGAGGCCG TTCGCGGACG TCCGTTGTCC GAGCGGGCTC AGGAAATGGG CTTCCGGATC
GGGCTGGGAT TGGTGCTGAT GTTGATGGTT TTCGCGACCT ACAACGACAT TCTTCACCTG
GCGTCGTCGT AA
|
|---|
| Protein sequence | MADIFMNGFS TLSHGIVGYV VPFLFVLTIV VFFHELGHFL VARWNGVKVL TFSLGFGPEI
AGFNDRHGTR WKLSAIPLGG YVKFFGDDSE ASTPSNDSLS KMSADERSVS FHHKGVGPRA
AIVVAGPLAN FILAIVLFTF LFAVFGVPST SARVDAIQPG SAAEAGGFQA GDVILAIDGS
PIHSFLDMQR KVGGDAGREM KFTVQRGSST IDLKATPELR EIKDRFGNVQ RLGILGISRS
TTANEATTER VNPAVAVWMG IKETWFVVDR TFSYIGGLFA GREAADQLGG PLRIAQISGQ
VATIGFTPLL HLAAVLSISI GLLNLFPVPL LDGGHLMFYA IEAVRGRPLS ERAQEMGFRI
GLGLVLMLMV FATYNDILHL ASS
|
|---|
| |