| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2465 |
|---|
| Symbol | |
|---|
| ID | 4022956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2753592 |
|---|
| End bp | 2755277 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637962658 |
|---|
| Product | chemotaxis sensory transducer |
|---|
| Protein accession | YP_569596 |
|---|
| Protein GI | 91976937 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.5909 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.697276 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCT CCAACATGAA GATAATCTAC AAAATCGCCG CGTGCTTCCT GCTGCTCAGC
GTCGTGGTCG GAGTTGGTAT CTGGCACGCC GCTGCGAAGA TGAGCGAGAT CGACCGACTG
TATTCCGACA TGCTCGACAA CGACTTGCAG GGCATGAAGG CCAACATCCG TGCCAATACG
CGCCTCTACA ATATAGGCCG TCTGTCATGG CGTGTCATCG CCGAGACCGA TCAGGCCGAG
TTTCAGAACG TCCGCCAAGA GGCAGCGGCG AACCGCAAGG AATTCATTGA ATACATCGCG
CAGGCCAAGA AGGGGCTTCC GGCCTACGCA GATGATTTCG ACCGGATTGT CCGACAGTTC
GAGGACGTCG TGACGAGGAA ATACGCGCTC GTCGAAAAGG CTGCGATTGC CAACCAGAAG
GACGAGGCCG TCCGACTGGC GAAGAGCATG GGCGAAGACA ATCAGGCATT GCGTGAGGCG
CAGAGCGCGA TCACGACCCG AGTCGACAAG GACCTCGCCG AGCGCAGGGA AGCCATTTCC
GCAGACGTCT CGAACACCGT CCGCCTCACT GTGCTGACGA TCGGCGGCGC CTTCGTGGCG
GTCCTGGCGA TCGCCTTCGC GATCGTGCAG CTCGGCATTG CGCGTCCGAT CGGGCGATTG
GTCGGCGATC TGCAGAAGAT GGCGCGCGGC GAGAGCGTCG AGGTGTCCGG CACCGAGCGC
GGCGACGAGA TCGGACAGAC CGCCAATGCG GTCGAAGGAA TCAAGCTGAT GCTCGACGAC
AAGGCGAGAC TGGAAGCCGG GGAGAAGGCC GAGCAGGATC GCCGGCTCGC GGCGCAGCGC
AAGCAGGACT TGGCGAAGCT CGCGCACGAT TTCGAAGCCG CGGTCGGCGA GGTGATCCAG
GCGGTGTCGT CGGCCTCGAC CGAACTCGAA GCGTCGGCGA CGACGCTGAC CTCGAACGCA
CAGCACGCGC AGGAAGTGAC GACGTCGGTC GCCGCGGCCT CAGAGCAGGC ATCGGCCAAC
GTGCAGTCAG TGGCGTCAGC CACTGAGGAA ATGGCGTCCT CGGTCACGGA GATCAGCCGG
CAGGTGCAGG AGTCCGCGCG CATCGCCCAA GAAGCCGTGG GGCAGGCGCA GACGACCAAC
GAGCGAGTCG GCGAATTGTC GGCTGCGGCG GCGCGGATCG GCGATGTGGT CGACCTGATC
AACACCATCG CCGGCCAGAC CAACCTGTTG GCGCTCAACG CCACCATCGA GGCGGCGCGC
GCGGGCGATG CCGGACGCGG ATTCGCGGTG GTCGCCAGCG AAGTGAAGGC GCTGGCCGAG
CAGACCGCCA AGGCCACCGG CGAGATCAGC CAGCAGATCA GCGGCATCCA GGCCGCGACC
GATCAGTCGG TGTCGGCGAT CCGGGAGATC GGCGCGACGA TTTCGAAGAT GTCGGAAATC
GCCTCGACGA TCGCCTCCGC GGTGGAAGAG CAGGGCGCCG CCACGCAGGA GATCTCGCGT
AACGTCCAGC AGGCGGCGCA GGGCACGCAG CAGGTGTCGT CCAGCGTGAT CGACGTTCAG
CGCGGCGCCA GCGAGACCGG TTCGGCGTCG GGCCAGGTGC TGTCGGCGGC GCAGTCTTTG
GCCAACGACA GCAACCGTCT CAAGCTCGAA GTCGGCAAGT TCCTCGAGAC CGTCCGCGCC
GCGTAG
|
|---|
| Protein sequence | MNISNMKIIY KIAACFLLLS VVVGVGIWHA AAKMSEIDRL YSDMLDNDLQ GMKANIRANT
RLYNIGRLSW RVIAETDQAE FQNVRQEAAA NRKEFIEYIA QAKKGLPAYA DDFDRIVRQF
EDVVTRKYAL VEKAAIANQK DEAVRLAKSM GEDNQALREA QSAITTRVDK DLAERREAIS
ADVSNTVRLT VLTIGGAFVA VLAIAFAIVQ LGIARPIGRL VGDLQKMARG ESVEVSGTER
GDEIGQTANA VEGIKLMLDD KARLEAGEKA EQDRRLAAQR KQDLAKLAHD FEAAVGEVIQ
AVSSASTELE ASATTLTSNA QHAQEVTTSV AAASEQASAN VQSVASATEE MASSVTEISR
QVQESARIAQ EAVGQAQTTN ERVGELSAAA ARIGDVVDLI NTIAGQTNLL ALNATIEAAR
AGDAGRGFAV VASEVKALAE QTAKATGEIS QQISGIQAAT DQSVSAIREI GATISKMSEI
ASTIASAVEE QGAATQEISR NVQQAAQGTQ QVSSSVIDVQ RGASETGSAS GQVLSAAQSL
ANDSNRLKLE VGKFLETVRA A
|
|---|
| |