| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2260 |
|---|
| Symbol | |
|---|
| ID | 4022745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2525043 |
|---|
| End bp | 2526557 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637962455 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_569396 |
|---|
| Protein GI | 91976737 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.483452 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTACACG CGGGGCTCCC GCCCCGGCCG AAATCCCGCA TGAACAAAGA ACGACTGATC
CCGCTGATCG TGGCCGCCGC GTTGTTCATG GAGAACATGG ACGCCACCGT GATCGCCACC
TCGCTGCCGG CGATCGCGGC CGATATCGGC ACCTCGCCGC TGACGCTGAA GCTCGCGATC
ACCTCCTATC TGCTGTCGCT TGCGGTGTTC ATCCCGGCCT CGGGCTGGAC CGCCGACCGG
TTCGGCGCCC GGACCGTATT CTCGGCCGCG ATCGCGGTGT TCATGGTCGG CTCGATCGGC
TGCGCGCTGT CGAGTTCGAT CACCGATTTC GTCGCCGCCC GCATCCTGCA GGGGCTGGGC
GGCGCGATGA TGACTCCGGT CGGACGGCTG GTGCTGCTGC GCTCGATCGA CAAGAGCGCG
CTCGTCAGCG CGATGGCGTG GATGACCTTG CCCGCGCTGA TCGGGCCGGT GATCGGGCCG
CCGCTCGGCG GCTTCATCAC CACCTATTTC TCGTGGCACT GGATCTTCCT GATCAACATC
CCGATCGGCC TTGTCGGCAT CTTCTTCGCG CAACGCTACA TCGACCCGAT CCGCAGCGAG
AATCCCGAAC GCTTCGATCT TTACGGACTG GTGCTGGCCG GGATCGGACT CGCCGGGATC
GCCTTCGGCC TGTCGGTCGC CGGGCTCGGT CTGCTGCCTT GGCCGATCGT GACCGGACTG
ATCGCGGTCG GCGCGATCTC GATGACGCTC TACCTGCTGC ACGCCCGCCG CACCGCCTCG
CCGGTGCTGG ATTTCTCGCT GATGCGGCTG ACGACGCTGC GCGCCAGCAT GATCGGCGGT
TTCCTGTTCA GGCTCGGAAT CGGCGCGTTG CCGTTCCTGC TGCCTCTGTT GATGCAGATC
GGCTTCGGGC TGACGCCGTT CCAGTCCGGC CTCGTCACCT TCGCCTCCTC GGCCGGCGCG
ATGGGCATGA AACCGCTGGC GGCGAGGATC ATCCGCACCT TCGGCTTCCG CAACATCATG
ACCATCAACG CGCTGATCAG CTCGGTGTTT CTCGCCGCCT GCGCGCTGTT CACGCCGGCG
ACGCCGCTGC TGCTGATCAT GATCATCCTG CTGGTCGGCG GCTTCTTCCG CTCGCTGCAG
TTCACCGCGA TCAATACCGT GGCTTATGCC GAGGTTCAGA GCGCACAGAT GAGCCGCGCC
ACCACGCTGG TCAGCGTCGG CCAGCAGCTG GCGATCTCGG CCGGCGTCGC GATCGGCGCG
TTCTCGGTCG AGACCACCAT GGCGTGGCGT CACACCACCA CGCTCAGCGC CGACGATTTC
GCCCCGGCCT TTATCGTGGT CGCGGTGATG GCGGCGCTGT CGGCGTATTT CTTCTGGCGG
ATGCCGGACG ACGCCGGTAG CGAAATTTCG GGGCGGAAGG CGATCGAAAT CTCGAGCAAA
AAAGCCGCAG CCGGCGCCGC GGCCAAGACG GCGAGCGAAG AAACCCAGGA TGCGCGCGAT
CAGAGATTGG GTTAG
|
|---|
| Protein sequence | MVHAGLPPRP KSRMNKERLI PLIVAAALFM ENMDATVIAT SLPAIAADIG TSPLTLKLAI
TSYLLSLAVF IPASGWTADR FGARTVFSAA IAVFMVGSIG CALSSSITDF VAARILQGLG
GAMMTPVGRL VLLRSIDKSA LVSAMAWMTL PALIGPVIGP PLGGFITTYF SWHWIFLINI
PIGLVGIFFA QRYIDPIRSE NPERFDLYGL VLAGIGLAGI AFGLSVAGLG LLPWPIVTGL
IAVGAISMTL YLLHARRTAS PVLDFSLMRL TTLRASMIGG FLFRLGIGAL PFLLPLLMQI
GFGLTPFQSG LVTFASSAGA MGMKPLAARI IRTFGFRNIM TINALISSVF LAACALFTPA
TPLLLIMIIL LVGGFFRSLQ FTAINTVAYA EVQSAQMSRA TTLVSVGQQL AISAGVAIGA
FSVETTMAWR HTTTLSADDF APAFIVVAVM AALSAYFFWR MPDDAGSEIS GRKAIEISSK
KAAAGAAAKT ASEETQDARD QRLG
|
|---|
| |