Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2003 |
Symbol | |
ID | 4022485 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 2240201 |
End bp | 2242183 |
Gene Length | 1983 bp |
Protein Length | 660 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637962196 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_569139 |
Protein GI | 91976480 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.151037 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGCCG AAGCGGGGCA CTACGCGCTG GTGCTGGCGC TTGCGCTGGC GTTGATCCAG TCCACCGTGC CGATCCTCGG CGCGCGGCTG AACGACGGCG GCCTGATGAA TGTCGCGCGC TCCACGGCGC TCGCACAATT CGCCTTCGTC GCGGCGTCGT TCGGCGCGCT GGTTTATCTC AACGTCACCT CGGACTTCTC GGTTCTCAAT GTCTACGAGA ACTCGCATTC GGCAAAGCCG CTGCTCTACA AGATCACCGG CGTGTGGGGA AACCACGAAG GCTCGATGCT GCTGTGGGTC GCGATCCTGG CGCTGTTCGG CGGTCTGGTC GCTGCATTCG GCAACAATCT GCCGCTTTCG TTGCGCGCCC ATGTGCTGGC GGTGCAGGCC TGGGTCGCCA GCGCGTTCTA TCTGTTCATC CTGATCACCT CGAACCCGTT CCTGCGGATT CCCAATCCGC CGATCGAGGG GCGTGACCTC AATCCGGTAT TGCAGGACAT CGGCCTCGCG GTGCATCCGC CGCTGCTCTA TCTCGGCTAT GTCGGCTTCT CGATCTCGTT CTCCTTCGCC GCCGCGGCGC TGCTCGAAGG CCGGCTCGAC GCCGCCTGGG CGCGCTGGGT GCGGCCGTGG ACGCTGATGG CGTGGATCTT CCTGACGCTC GGCATCGCGA TGGGCTCGTA TTGGGCTTAC TACGAACTCG GCTGGGGCGG CTGGTGGTTC TGGGACCCGG TCGAGAACGC CTCACTGATG CCATGGCTCG CCGGCACCGC GCTGCTGCAT TCGGCGCTGG TGATGGAGAA GCGCAACGCG CTGAAGGTCT GGACCATCCT CCTCGCGATC CTGACGTTCT CGCTGTCGCT GCTCGGCACC TTCCTGGTGC GCTCCGGCGT CTTGACCTCG GTGCACACCT TCGCCACCGA TCCGTCGCGT GGCGTGTTCA TCCTGGTAAT TCTGTGCGTC TTCATCGGCG GCAGTCTCGC GCTGTTCGCC TGGCGCGCTT CGGCGTTGAA GCAGGGCGGG CTGTTCGCAC CGATCTCCCG CGAGGGCGCG CTGGTGCTGA ACAATCTGTT CCTCACCACC GCCTGCGCCA CGGTGTTCGT CGGTACGTTG TATCCCTTGG CGCTCGAAGT CGTCACCGGT GACAAGATCT CGGTCGGCGC GCCGTTCTTC AATCTCACCT TCGGGCCGCT GTTCGTGCCG CTGATGCTGG CGATGCCGTT CGGGCCGCTG CTGGCGTGGA AGCGCGGCGA CATCGTCGGC GCGGCGCAGC GGCTGATCGC GGCCGGCGTC GTGGCGCTGC TGACGGTCGC CCTGGTCTGG GCCTGGACCA CCGGCGGCCC GGTGCTCGCG CCGCTGGCGA TCGGGCTCGC GGTGTTCGTG ATCGCCGGCG CGCTTGCCGA CATCGCCGAA CGCATCGGAC TGTTCCGCAA CCCGCTGTCG ATCTCCACGC GCCGTGCGCG CGGGCTGCCG CGCTCGGCCT GGGGCACGAT GTTCGCCCAT GCCGGCGTCG GCATGGCGCT GATCGGCATC GTCTGCGAGA CCACCTGGAA CAGCGAGCAC ATCGCCGCGA TGAAGGAGGG CGATACAGCG CGGATCGCCG GCTACGAACT CAAATTCGAA GGCGCGATGC AGCGCCAGGG GCCGAATTTT CGCGAATTGG AGACGCGCTT CTCGATCAGC GAGGGCGGCC AGCCGGTCGG CGTCATGACG CCGTCGAAGC GCAGCTTCAC CACCCGCGGC ACCTCGACCA CCGAGGCGGC ACTGCTGACC CGTGGCTTCA GCCAGCTTTA CGTCTCGCTC GGCGAGATCG ACGCCGCGGG CGCGGTGACG GTGCGGATCT ATCACAAACC GATGGTGCTG CTGATCTGGT TCGGCCCGCT GCTGATGGCG TTCGGCGGCC TGTTGTCGCT GTCCGACCGT CGCCTGCGCG TCGGCGCACC GAAACCGGCC AAGCCGCAGC GTACGCTGCA GCCGGCGGAG TAG
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Protein sequence | MIAEAGHYAL VLALALALIQ STVPILGARL NDGGLMNVAR STALAQFAFV AASFGALVYL NVTSDFSVLN VYENSHSAKP LLYKITGVWG NHEGSMLLWV AILALFGGLV AAFGNNLPLS LRAHVLAVQA WVASAFYLFI LITSNPFLRI PNPPIEGRDL NPVLQDIGLA VHPPLLYLGY VGFSISFSFA AAALLEGRLD AAWARWVRPW TLMAWIFLTL GIAMGSYWAY YELGWGGWWF WDPVENASLM PWLAGTALLH SALVMEKRNA LKVWTILLAI LTFSLSLLGT FLVRSGVLTS VHTFATDPSR GVFILVILCV FIGGSLALFA WRASALKQGG LFAPISREGA LVLNNLFLTT ACATVFVGTL YPLALEVVTG DKISVGAPFF NLTFGPLFVP LMLAMPFGPL LAWKRGDIVG AAQRLIAAGV VALLTVALVW AWTTGGPVLA PLAIGLAVFV IAGALADIAE RIGLFRNPLS ISTRRARGLP RSAWGTMFAH AGVGMALIGI VCETTWNSEH IAAMKEGDTA RIAGYELKFE GAMQRQGPNF RELETRFSIS EGGQPVGVMT PSKRSFTTRG TSTTEAALLT RGFSQLYVSL GEIDAAGAVT VRIYHKPMVL LIWFGPLLMA FGGLLSLSDR RLRVGAPKPA KPQRTLQPAE
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