Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1878 |
Symbol | |
ID | 4022360 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 2107099 |
End bp | 2108013 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637962071 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_569014 |
Protein GI | 91976355 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0386113 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAAGG CACTCGACGG CAAAGTCATC ATCGTCACCG GCGCGGGGCG CGGCATCGGC CGCGAGATCG CGCTGCTCGC TGCGCGCGAA GGCGCCAAGG TGGTGGTCAA CGATCCCGGC GGCGCCGCCG ACGGCTCGGG CACCGACGCC TCGCCGGCCG AGCAGGTGGT CGAGGAGATC AAGAAGGAAG GCGGCACCGC GGTCGCGAAT TTCGAGACCG TCGCCGAGGC GGTCCCCGCC AGCAAGATCG TCAAACAGGC AGTTGATACT TACGGCAAGC TCGACGGCGT CGTGAACAAT GCCGGCATCC TGCGCGACGC CATCTTCCAC CGCATGAGCA TCGATGCCTT CGAGCAGGTC ATCAAGGTGC ATCTGATGGG CTCGTTCTAT GTGTCGCACG CCGCAGCAAG GCTGTACCGC GAGCAGGAAA GCGGTTCCTT CGTCCACTTC ACCTCGACCT CGGGGCTGAT CGGCAATTTC GGCCAGGCCA ACTACGCCGC CGCCAAGCTC GGCATCGTCG GCCTGTCGAA GTCGATCGCG CTCGACATGC AGCGCTTCAA CGTCCGCTCC AACTGCGTCT CTCCGTTCGC CTGGTCGCGG CTGATCGGCA CGATCCCGAC CGAGACCGAG GAAGAGAAGG CCCGCGTCGC GCGGATGCAG CAGATGGGTC CGGAGAAGAT TGCGCCGTTG TCGGTTTTCC TGCTCGGCGA CGCCGCCAAG GACGTCACCG GCCAGATCTT CGCGGTGCGG ATGAACGAGA TCTTCCTGAT GGGCCAGTCG CGCCCGATCC GCTCGGTGCA TCGCGACGGC GGCTGGACCT GCGAAACGCT GGCCGAGCAC GGCATGCCGG CGCTGAAGGG TTCGTTCTAC AAGCTCGACC GCTCCGCCGA CATCTTCAAC TGGGACGCGA TCTGA
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Protein sequence | MAKALDGKVI IVTGAGRGIG REIALLAARE GAKVVVNDPG GAADGSGTDA SPAEQVVEEI KKEGGTAVAN FETVAEAVPA SKIVKQAVDT YGKLDGVVNN AGILRDAIFH RMSIDAFEQV IKVHLMGSFY VSHAAARLYR EQESGSFVHF TSTSGLIGNF GQANYAAAKL GIVGLSKSIA LDMQRFNVRS NCVSPFAWSR LIGTIPTETE EEKARVARMQ QMGPEKIAPL SVFLLGDAAK DVTGQIFAVR MNEIFLMGQS RPIRSVHRDG GWTCETLAEH GMPALKGSFY KLDRSADIFN WDAI
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