| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1868 |
|---|
| Symbol | |
|---|
| ID | 4022350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2091167 |
|---|
| End bp | 2092744 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637962061 |
|---|
| Product | long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_569004 |
|---|
| Protein GI | 91976345 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.205754 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGT TGTCCGAGCC GAACACGCTG GCCGAGGTCG TCCGTGCGCA GGCCGAAGCC
CGCGGCGACG AGATCGTTTT CGAATTCGAA GGTCGTATCA CCACCTTCGC GCAATTCGAC
GCCCACACCA ACCAGATCGC CCACGCACTC AAAGCCTCCG GCGTCCAGCC GCGCGAGCGC
GTCGCCTATC TCGGCAAGAA CAGCGATATC TATTTCGAGC TGCTGCTCGG CGCGATCAAG
GCCAATGTGG TGATGGCGCC GGTGAACTGG CGGCTTGCCG GTCCCGAGAT CGCTTTCATC
GTCGAGGACT GCAAGGCCGC GGTTCTATTC GTCGGCCCGG AATTCGTCGA TCAGGTCCGC
GGCCTGAAGG ATCAGTTGCC GGGCGTGCGG CACATCATCA CCACCGAGGG CGGCGCGCCG
GAATGGACCG ACGTCGCCCA ATGGCGCGAT GCGCAGCCGA AGGACGATCC GCAGGTCCAG
ATCGACCCCG CCGACATCGC GATCCAGCTC TACACTTCGG GCACCACGGG AAAGCCAAAA
GGCGCGATGC TGAGCCACGC AAACTTCCTG TCGCTGGTCC GCGCTGGAAA GGACAGCACG
CCCGAGTGGA ACAAATGGTC AACCGACGAC GTCTCGCTGG TGGCGATGCC GGTGTTCCAC
ATCGGCGGCT CCGGCTGGGG CGTGATCGGC ATCTATCACG GCGCCAAGGG CGTGGTCGCG
CGCGAGTTCG ATCCGACCAA GGTGCTGGAT TTCTTCGAGC ACGCCAAGAT CACCAAGCTG
TTCATGGTCC CGGCCGCGAT GCAGTTCGTG GTGCGGCAGC CGCGCGCCCG CGAGATCGAT
TTTTCGCGGC TGAAGTACAT GCTGTACGGC GCCTCGCCGA TTCCGGCGGC GCTGCTGAAG
GAGTGCATCG ACGTCTTCAA ATGCGGCTTC GTGCAGATGT ACGGCATGAC CGAGACCACC
GGCACCATCG TGGCGCTGCC GCCGGAGGAT CACGTCGAGG GACTGGAGCG GATGCGTTCC
GCCGGCAAGG CACTGCCCGG CGTCGAACTC GCGATCCTCG ATCCCGACGG CAACCGTCTG
CCGCCGCGCC AGGTCGGCGA GATCGCCACC CGATCCGGCT CCAACATGGT CGGCTACTGG
AATCTGCCCG AGGCGACCAA GAGAACGATC GACGGCGACA ACTGGCTGCG CACCGGCGAC
GCCGGCTACA TGGACGAGGA CGGCTACCTC TACATCCACG ACCGCATCAA GGACATGATC
ATCTCCGGCG GCGAGAACAT CTACCCGGCC GAAGTCGAGA GCGCGATCTG CGATCACCCG
GATGTGGCCG AGGTCGCTGT GGTCGGCGTG CCGGACGATC AGTGGGGCGA AGCGGTCAAG
GCGGTGGTCG TCATGAAGCC GGGCAAGGAG GCGAGCCCGC AGGACATCAT CAGCTTCACC
CGCAGCCGCA TCGCAGGCTA CAAGACGCCG AAGTCGATCG ACTTCATCCC CGCGCTGCCG
CGCAACGCCT CCGGCAAGAT CCTGCGCCGC AACCTTCGCG ACCCGTATTG GACGGGGAAG
GACCGGCAGG TGAACTGA
|
|---|
| Protein sequence | MSELSEPNTL AEVVRAQAEA RGDEIVFEFE GRITTFAQFD AHTNQIAHAL KASGVQPRER
VAYLGKNSDI YFELLLGAIK ANVVMAPVNW RLAGPEIAFI VEDCKAAVLF VGPEFVDQVR
GLKDQLPGVR HIITTEGGAP EWTDVAQWRD AQPKDDPQVQ IDPADIAIQL YTSGTTGKPK
GAMLSHANFL SLVRAGKDST PEWNKWSTDD VSLVAMPVFH IGGSGWGVIG IYHGAKGVVA
REFDPTKVLD FFEHAKITKL FMVPAAMQFV VRQPRAREID FSRLKYMLYG ASPIPAALLK
ECIDVFKCGF VQMYGMTETT GTIVALPPED HVEGLERMRS AGKALPGVEL AILDPDGNRL
PPRQVGEIAT RSGSNMVGYW NLPEATKRTI DGDNWLRTGD AGYMDEDGYL YIHDRIKDMI
ISGGENIYPA EVESAICDHP DVAEVAVVGV PDDQWGEAVK AVVVMKPGKE ASPQDIISFT
RSRIAGYKTP KSIDFIPALP RNASGKILRR NLRDPYWTGK DRQVN
|
|---|
| |