| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1084 |
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| Symbol | |
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| ID | 4021560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1234037 |
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| End bp | 1235032 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637961276 |
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| Product | nitrogen-fixing NifU-like |
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| Protein accession | YP_568223 |
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| Protein GI | 91975564 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0694] Thioredoxin-like proteins and domains
[COG0822] NifU homolog involved in Fe-S cluster formation |
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| TIGRFAM ID | [TIGR02000] Fe-S cluster assembly protein NifU |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGACA ATCTCGATAG GCTCGACGAA CACATCTCCA GCCCGCGCAA TGCCGGTGTG
CTGCCGCACG CCAATGCGGT CGGCTCGTTC GGCGCCATCC GCTGGGGTGA CGCGGTCAAA
CTGATGCTGC AAGTCGATCC GCGAACCGAT CGGATCGAAC AGGCGCGGTT TCAGGCCTTC
GGGTGCAGCT CGTCGATCGC ATCGTCCTCG GCGGTTACCG AGATGATCAC CGGCAGAACA
CTCGACGAAG CCGTCGGGAT CAGCGCTGCC GATATCGCGG ATTATCTCGG CGGCCTGCCG
CCGGAACGCA TGTACTGCGC GGTGATGACC TATGAGGCCC TGCAGAAGGC GATCGGGTCG
TATCGCGGCG AGGCCGAGCT GAGCGAAGCC GATGCGGCGC CGTCCTGCAA ATGCCTCGGC
GTCAGCCAGA TGATGATCGA GCGCACCATC CGTTTCAATC GGCTGACCAG CGTCGAGCAG
GTGACCCACC ACACCAAGGC GGCCGGCAGT TGCAGCGCCT GTTTCAAGCA GGTCGAAGGC
CTGCTGGCGC GGGTCAATGC CGAGATGGCG GAGGATGGGC TGATCGGGCC CGGCGACGCC
TATCAGCTCG GTTCGACGTC GCCGCGCGCG ATCGATCTGA AGCCGCACGG CGCGCCGCAG
CCGGCGACCA ATATCTTTGC CGCCAAGGCC GCGCCGGCGC ATCTGCGCGC CGCGCCGAAG
AGCGCGCCGT CGCGTCCGGC ACCTGCGCCT GCCGCGGTCG GGGTCGATGC GCCGTCGCAG
ACGACGCTGA TTGCCGAAGC GCTCGACGAG CTGCGGCCGC ATTTGAAGCG CGATGGCGGC
GACTGCGAAC TCGTCAATGT CGAGGGCAAT GTCGTTTACG TCAGGCTGTC GGGCAATTGC
GTCGGCTGCC AATTGTCATC GCTGACGCTG TCCGGCGTTC AGGCCAGGCT CGCCGACAGG
CTCGGCCGGC CGCTGCGTGT GGTGCCTGTG CCATGA
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| Protein sequence | MLDNLDRLDE HISSPRNAGV LPHANAVGSF GAIRWGDAVK LMLQVDPRTD RIEQARFQAF
GCSSSIASSS AVTEMITGRT LDEAVGISAA DIADYLGGLP PERMYCAVMT YEALQKAIGS
YRGEAELSEA DAAPSCKCLG VSQMMIERTI RFNRLTSVEQ VTHHTKAAGS CSACFKQVEG
LLARVNAEMA EDGLIGPGDA YQLGSTSPRA IDLKPHGAPQ PATNIFAAKA APAHLRAAPK
SAPSRPAPAP AAVGVDAPSQ TTLIAEALDE LRPHLKRDGG DCELVNVEGN VVYVRLSGNC
VGCQLSSLTL SGVQARLADR LGRPLRVVPV P
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