| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0868 |
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| Symbol | |
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| ID | 4021342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 973066 |
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| End bp | 974550 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637961058 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_568007 |
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| Protein GI | 91975348 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.796056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.69001 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGAAAGG AAATCGGCCG GCGACGGCGG ATGTCCGCGC GGCTGCTGAT CGCCTCGTCC
GTCATCACAG TGCTGGGCTT TTCCGCGGTG TGCGGCAGCA TCATGCTCGA CATGCGCGGC
AACGCTCAGG AATTGGCGCG GCAGACCCAG GAAAATCTGG CGTCCACGAT CAGCGCTGAC
ATCAACCGCA ACATCGAGGC GTATGATCTG TCGCTGCGTT CCGTTGTCAG CAACCTGGCG
CTGCCGCAAC TTGCTCATGT CGACGAAACC CTCCGACGGC TCATCCTGTT CGATCACGCG
AGCATTGCGA GGCATTTCGG TTCGATCCAG GTGTTCGACG CGCAAGGAAA CCTGACGATC
GACTCCGCGA CGCTGACGCC CGAGAAACTC AATCGCGGCG ATGAGCCCTT CGTCAGCGCG
CATCGCGACG ATCCGACTGT CGGTCTCTAT ATCAGTCGTC CGATGCAGCA TCGCGGCACC
TTTGCGATCG TGCTCAGCCG GCGGATCTCC GGAACGGACG GCCGGTTTCT CGGCGTTGTC
GCCGGTTCGA TCCGTTTCAG CTATTTCAAG CAGGTGTTCA GCCGGCTCCG GCTGGAGCCG
GATGACACGA TCGGGGTCGT TGCGCGCGAC GGAACGCTGG TGATGCGGAC GCCGTTCAGA
CCGGACGTCA TCGGCACCAA TGTGATGGGC GCCCCGGGCG TCAGACAGGT TTTCAGCCAG
CGGCGAGGCT GGTACAGCGG CGAAGGCATC ATCGACCAGA TTCCGAGGAT GATGGTTTGG
GCCGACGGCA CCCGTCCGTT GGTGGTGATC GTCGGGAAAT CATGGAGCGA TGTCTTCCGG
ATGTGGCGCC ATGAGGCGAT CCGAATCAGC CTTATTCTGC TCGGGCTCGC GATCATCGTC
GCCGGCTTCA CCGTCTTCTT TATCCGCGAG ATCGACCGCC GCGCCGAGGC CGAGCGCCGG
CTGGAAGAAC TCGCCACTAC CGATTCGTTG ACCGGGCTGA TCAACCGCCG CAAGTTCGAT
ACCCTGATCG AGCGCGAATG GCGCCGCGCG CTGCGTATGA ACACGCCGAT CGCGCTGCTG
ATCATCGACG CCGATCACTT CAAGGCATTC AACGACGGCT ACGGTCACCA GGCCGGCGAT
CAGGTGCTGG TCGGCATCGC GCTGTGCATC GGCGACTCGG TGCAGCGCGC CGGCGACTGC
GCCGCGCGAT TCGGCGGCGA GGAGTTCGCC GTGCTGTTGC CGGGGGGCAG TGCCACCGCA
GCGCAGGGCG TCGCGGAGAC CATCCGCAAC AAGGTCGCGC ATTGGTCGGT CGGCCAGGGC
GATGTCACGG TCAGTATCGG CGTCGCCAGC ATGACGCCTG CGCCGGGCCA ACACTGGCCG
GTGCTGTTCG AAGCCGCCGA CAAGGCGCTG TATGCGGCCA AGGATCTTGG CCGCAACTGC
TGCGTGGTCG CCGCCAGCCG GCACGATCTG ACGCTGGCGG CGTAA
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| Protein sequence | MRKEIGRRRR MSARLLIASS VITVLGFSAV CGSIMLDMRG NAQELARQTQ ENLASTISAD
INRNIEAYDL SLRSVVSNLA LPQLAHVDET LRRLILFDHA SIARHFGSIQ VFDAQGNLTI
DSATLTPEKL NRGDEPFVSA HRDDPTVGLY ISRPMQHRGT FAIVLSRRIS GTDGRFLGVV
AGSIRFSYFK QVFSRLRLEP DDTIGVVARD GTLVMRTPFR PDVIGTNVMG APGVRQVFSQ
RRGWYSGEGI IDQIPRMMVW ADGTRPLVVI VGKSWSDVFR MWRHEAIRIS LILLGLAIIV
AGFTVFFIRE IDRRAEAERR LEELATTDSL TGLINRRKFD TLIEREWRRA LRMNTPIALL
IIDADHFKAF NDGYGHQAGD QVLVGIALCI GDSVQRAGDC AARFGGEEFA VLLPGGSATA
AQGVAETIRN KVAHWSVGQG DVTVSIGVAS MTPAPGQHWP VLFEAADKAL YAAKDLGRNC
CVVAASRHDL TLAA
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