Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4511 |
Symbol | |
ID | 3972289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 5028159 |
End bp | 5029508 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637927622 |
Product | secretion protein HlyD |
Protein accession | YP_534353 |
Protein GI | 90425983 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.713937 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0817386 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTCG CGGCAGGCAT TCAGAGTTTC AGGCTCGCCT TCGAACGCGA CAAGCGTCTG ATGGATGCAA TCACCCTGCC GCCGATGGGC AGGGAGAGCG CGGCGTTTCG ATTTGCCCGA AGCTTCGGCC TGATTGCATC GGCAGGGACT GCGGCTGCGA TCATCTGGGC CAGCTTCGCC GAACTGAACG AAGTCACGCA AGCCGTCGGA AGCTTCACGC CGGTCGGATC GGAACAGGTG GTTCAGCATC TCGAGGGCGG CTTGGTCGAG CGCATCGCGG TTCGCGAGGG GGCGACGGTT CAGAAAGGGG ATACGCTCAT CGTGCTTCGC GACGCCGGAA CGGCGGAGGA CGACGTCGCG CTGGAACGGC AAAGGGTCGA TCTGTTGGCG CAGATCGAGA CCCAAGTGGC TCTGTTCGAG GGACGCGAGC CGGCTTTCAC GAGTTCAAAC GGCCGCTATG CGGTCGAGGA AATCGCCAAC ACCAATGCCT TCGCTGCCGC CAAGACCCTT GAGAAGAACG AGTATTCCCG CCTTTCGAGC CAGATCGCGC AGGCCAGATA CAATCGCGAG GCCACTGCCA TCCAGTTGAA GGGAGCGCTC GACGAGGTCG AGAACGCCGA GCGCGTGTCG AAGCGCTTCG CGGATTTGAT GCGGATCGGC GTGGCGACGG GGCTGCAAGC CGAGGAGCGC CGTCAGGCGG TGGTCCGCGC GCGGTCGGCG GCGGACGCTG CGGCGTCGCG CGAGCAGGGA GCGATCGAAC GCCTGGGCGA GGTCGAAAAG CAACTGGTGA GCTACGGAGC GGAATTGCGC TCGAATCGGG CCCAGAAGGT TCGCGATCTC GAGGCCAGTC TCAATGTCGT CGATGCCAAC ATCGCGAAGA AGAACCAACG CAAGCAGCGC CTCACCATCA CCGCGCCCGT CGCCGCGCTG GTGAAATCGA TCGAGGTCAA TTCCATCGGT CAGGTGGTCG GGTCCGGCCA GGCGCTGGCG ACGCTGGTCC CTCTCAATAC GCCGCTGGTC GCCGAAACCA GCGTTCGCTC GTCAGAGATC GGTTATCTCC GCGTGGGACA ATCGGCGCAG ATCCGCGTCG GCGCTTACAA TTTCACACGC TTTGGAAGCC TCGAAGGCGT CGTCGAGTCC ATTTCGCCCT CGTCCTTCCA GATTGGCGGC CAGTATTATT ATCGCGTCAA GATCAAGCCG GTCGACATCC GAATGCCCAA GGCTCCTGGA GCGGTGATCC AGCCGGGCAT GGAGGTGACC TGCGAGATCA TCACCGGGCG CAAGACGGTC ATGGAATATA TTCTTACCCC CTTGCAAAGG ACGTTGGGCT CTGCCTTCAA CGAACGGTGA
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Protein sequence | MKFAAGIQSF RLAFERDKRL MDAITLPPMG RESAAFRFAR SFGLIASAGT AAAIIWASFA ELNEVTQAVG SFTPVGSEQV VQHLEGGLVE RIAVREGATV QKGDTLIVLR DAGTAEDDVA LERQRVDLLA QIETQVALFE GREPAFTSSN GRYAVEEIAN TNAFAAAKTL EKNEYSRLSS QIAQARYNRE ATAIQLKGAL DEVENAERVS KRFADLMRIG VATGLQAEER RQAVVRARSA ADAAASREQG AIERLGEVEK QLVSYGAELR SNRAQKVRDL EASLNVVDAN IAKKNQRKQR LTITAPVAAL VKSIEVNSIG QVVGSGQALA TLVPLNTPLV AETSVRSSEI GYLRVGQSAQ IRVGAYNFTR FGSLEGVVES ISPSSFQIGG QYYYRVKIKP VDIRMPKAPG AVIQPGMEVT CEIITGRKTV MEYILTPLQR TLGSAFNER
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