| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4508 |
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| Symbol | |
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| ID | 3972286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 5022663 |
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| End bp | 5024180 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637927619 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_534350 |
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| Protein GI | 90425980 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0567962 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCGTC TCAACATCAG GAGATTTCGT CATCTGTCGC TGCTAACCGT CTGCGCACTC
GCGGCGTGCA AGACCAGCGA CGGACGTCAT CCTCCGGAGT TCCGACTGCC TGATCGCTTC
ACCACCGGGT CGGTCAATCC TGTGCCGAAC CCGTACCAGA CGTGGTGGCG GCGGGTCGGA
AACCACGAAC TGAGCCAACT GATCGAGCGC GGCCTCGCCA ACAACCTTGA TATCGCAAGA
GCCGTCGACC GCATCAACGT GGCAAGTCAA CGCGTGACGA TCGCCGGCGC CGACGCTTTC
CCTCAGGTCG GCGTCGGAGC GACAACGCAA TCGTTCGGTA CCATACCTGC CGGCGTGACC
GGGACCACAT CAACTCATTC CGCCGGCCTG AACGTCTCCT GGCTGCTCGA CTTCAACGGC
AAGATCGCCA AGCAGAAGTC GGCTTCGGAA GCCGAGCTGC GGGCCGCGGG TTACGACTTC
GCCAATGTCC GGTTGGCCTA TCTGGCCGAT CTGATCGCAA CCTATATCGA CATGAACTAC
TTCGCGCGGA CGATCGCGGT AACCGAGGGA TCGATCAAGA ACGCCGAGGA CACCGTAACG
CTGGTTCGCA ACATGAAGGA ATTGGGGACG TCCAGCGAAC TCGACATCGC CCAGGCCCAA
GCCGATCTCG CGACGTTGCG TGCCTCGCTG CCCGCACTAC AGCGCGACAG GACCATCGCA
GCCAATCACA TCGCGACGTT GATCGGCGTC GCTGCGGGCA GCCTGACGCT ACAGGGAAGC
CGGAGTCTTG AGCCGCTTCT CTCCGCCGAT GTTGGAGCTG GAATTCCCGC GGATCTCATC
CGCAACCGGC CCGATATCCG CGTCAAAGAA CAACTGCTCT ACGCGGCCGC AGAGCGCATC
GGTGTGGCGC GGGCGGATCT GCTGCCCAGC GTGACGTTGA ACGGGACGAT CAATGCGGCG
CTGTCGCCGA CGATCTACGG GATGCTCGGT GGCGGCACCT GGGCGTTCGC CTCTTCCATC
CTCGCCCCGG TGTTCGACGG CGAGCGGCGT CAGGCGACGA TCCGGCTCGC CCAAGCCGAC
TGCCACCTGC GCTATCTGGA CTGGAGGCAG AACGTGCTGG TGGCGGTCGA GGAAGTCGAG
AACCTGCTCA CCTCGATCAA GCGCGGCCAG CGTGAACTCG CGTCATTGCG CGACAGCGTC
GCCGCCAACG AAAAGAGCCT CAGCCTGACC CGCGCCGCAA TGACCGGCGG CACTGGAATC
CTACTCGGCG TGATCGACGC CCAGCGCTCG CTCAATCGGT CCCGCCTGGC ACTGGCGCAG
AGCCAGCGCC AGCTCGCCCG GTTTCAGATA TCGCTGCAAA TTGCGATCGG AGCAGGCGCC
GACGCGCCGG TATCGGCTCC GGTGCCGGTT GTCGCTGCGA CGACGCCCGC TGCTCCCGCT
GCGAACGTCG CGCAGCGCGA CGGCTCGCCG GCTCCGCAAC CGACGACCGT CAAGAAGCCG
CCGCGACCGG CTGCTTGA
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| Protein sequence | MSRLNIRRFR HLSLLTVCAL AACKTSDGRH PPEFRLPDRF TTGSVNPVPN PYQTWWRRVG
NHELSQLIER GLANNLDIAR AVDRINVASQ RVTIAGADAF PQVGVGATTQ SFGTIPAGVT
GTTSTHSAGL NVSWLLDFNG KIAKQKSASE AELRAAGYDF ANVRLAYLAD LIATYIDMNY
FARTIAVTEG SIKNAEDTVT LVRNMKELGT SSELDIAQAQ ADLATLRASL PALQRDRTIA
ANHIATLIGV AAGSLTLQGS RSLEPLLSAD VGAGIPADLI RNRPDIRVKE QLLYAAAERI
GVARADLLPS VTLNGTINAA LSPTIYGMLG GGTWAFASSI LAPVFDGERR QATIRLAQAD
CHLRYLDWRQ NVLVAVEEVE NLLTSIKRGQ RELASLRDSV AANEKSLSLT RAAMTGGTGI
LLGVIDAQRS LNRSRLALAQ SQRQLARFQI SLQIAIGAGA DAPVSAPVPV VAATTPAAPA
ANVAQRDGSP APQPTTVKKP PRPAA
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